RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA664479" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA664479 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
629189 629189 PRJNA664479_S_NODE_17461_length_163_cov_0.894737_g17385_i0 PRJNA664479 17461 163 0.894737 1.45842131 Thermus sp. NEB1569 2918899 Bacteria Bacteria 285 1.23e-72   NTclustered gi|2199052145|gb|CP092445.1| 2918899 g17385 i0 98.16 45.1656441717791 163 3 100 0 1 163 1919724 1919562 Thermus sp. NEB1569 chromosome, complete genome blastn 7362 285 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NEB1569
30049703 30049703 PRJNA664479_S_NODE_18011_length_162_cov_0.902655_g17935_i0 PRJNA664479 18011 162 0.902655 1.4623011 Deinococcus sp. 47478 Bacteria Bacteria 48.5 1.12e-4   NR WP_293913308.1 47478 g17935 i0 71 0.574074074074074 31 9 57.4 0 66 158 1286 1316 WP_293913308.1 DNA polymerase III subunit alpha, partial [Deinococcus sp.] diamond 93 48.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
30681548 30681548 PRJNA664479_S_NODE_15213_length_166_cov_0.871795_g15137_i0 PRJNA664479 15213 166 0.871795 1.4471797 Deinococcus yunweiensis 367282 Bacteria Bacteria 95.5 3.09e-23   NR WP_412026654.1 367282 g15137 i0 79.6 0.975903614457831 54 11 97.6 0 4 165 1 54 WP_412026654.1 hypothetical protein [Deinococcus yunweiensis] diamond 162 95.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;