RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA664479", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA664479 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27934352 27934352 PRJNA664479_S_NODE_2545_length_311_cov_5.114504_g2469_i0 PRJNA664479 2545 311 5.114504 15.90610744 Blyttiomyces helicus 388810 Fungi Fungi 53.5 3.85e-6   NR RKO84609.1 388810 g2469 i0 48.2 4.31189710610932 56 29 54 0 127 294 105 160 RKO84609.1 ribosomal protein S13 [Blyttiomyces helicus] diamond 1341 53.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces helicus
31788046 31788046 PRJNA664479_S_NODE_377_length_731_cov_7.501466_g319_i0 PRJNA664479 377 731 7.501466 54.83571646 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 58.2 6.24e-6   NR KAH6572344.1 1357716 g319 i0 33.5 1.53488372093023 179 119 73.5 0 728 192 115 293 KAH6572344.1 hypothetical protein BASA62_003436 [Batrachochytrium salamandrivorans] diamond 1122 58.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;