RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA664479", tax_kingdom = "Bacillati" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA664479 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7007791 7007791 PRJNA664479_S_NODE_4006_length_259_cov_1.628571_g3930_i0 PRJNA664479 4006 259 1.628571 4.21799889 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 401 2.0299999999999993e-107   NTclustered gi|225696188|gb|FJ805855.1| 259957 g3930 i0 94.595 125.239382239382 259 14 100 0 1 259 2560 2302 Uncultured Chroococcidiopsis sp. clone AR2_2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 32437 401 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
12108491 12108491 PRJNA664479_S_NODE_18990_length_161_cov_0.892857_g18914_i0 PRJNA664479 18990 161 0.892857 1.43749977 Synechococcus sp. CBW1107 2789857 Bacteria Bacteria 56.5 0.001   NTclustered gi|2638498304|emb|OY986430.1| 2789857 g18914 i0 100 0.186335403726708 30 0 19 0 107 136 257058 257087 Synechococcus sp. CBW1107 isolate KAC_114 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CBW1107
19756081 19756081 PRJNA664479_S_NODE_6696_length_214_cov_1.515152_g6620_i0 PRJNA664479 6696 214 1.515152 3.24242528 Coleofasciculus chthonoplastes 64178 Bacteria Bacteria 333 6.009999999999999e-87   NTclustered gi|146740643|emb|AM709630.1| 118168 g6620 i0 96.517 117.775700934579 201 7 94 0 14 214 2839 3039 Microcoleus chthonoplastes PCC 7420 partial ribosomal RNA operon, strain PCC 7420 blastn 25204 333 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Coleofasciculus Coleofasciculus chthonoplastes
20288608 20288608 PRJNA664479_S_NODE_10536_length_185_cov_0.882353_g10460_i0 PRJNA664479 10536 185 0.882353 1.63235305 Microcoleus 44471 Bacteria Bacteria 342 8.369999999999999e-90   NTclustered gi|225696243|gb|FJ805910.1| 1211 g10460 i0 100 152.783783783784 185 0 100 0 1 185 3186 3002 Uncultured cyanobacterium clone AN2_1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 28265 342 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;