RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA664479" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA664479 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27030312 27030312 PRJNA664479_S_NODE_5442_length_230_cov_1.994475_g5366_i0 PRJNA664479 5442 230 1.994475 4.5872925 root 1 Root_unresolved Root_unresolved 61.6 1.96e-9   NR QLA09602.1 3039 g5366 i0 44.8 161.621739130435 67 37 87.4 0 201 1 28 94 QLA09602.1 60S large subunit ribosomal protein uL5 [Euglena gracilis] diamond 37173 62 0.993548387096774 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
30081276 30081276 PRJNA664479_S_NODE_12632_length_174_cov_0.928000_g12556_i0 PRJNA664479 12632 174 0.928 1.61472 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 48.9 9.58e-5   NR KAF5213947.1 5693 g12556 i0 42.9 1.89655172413793 56 32 96.6 0 3 170 218 273 KAF5213947.1 hypothetical protein ECC02_013492 [Trypanosoma cruzi] diamond 330 48.9 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
31914757 31914757 PRJNA664479_S_NODE_1137_length_443_cov_5.482234_g1061_i0 PRJNA664479 1137 443 5.482234 24.28629662 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 48.9 6.14e-4   NR XP_002676006.1 5762 g1061 i0 49 0.345372460496614 51 26 34.5 0 1 153 3 53 XP_002676006.1 polyubiquitin [Naegleria gruberi] diamond 153 48.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32768033 32768033 PRJNA664479_S_NODE_13320_length_171_cov_0.918033_g13244_i0 PRJNA664479 13320 171 0.918033 1.56983643 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 48.5 1.26e-4   NR EPY32002.1 28005 g13244 i0 41.1 0.982456140350877 56 33 98.2 0 3 170 100 155 EPY32002.1 hypothetical protein STCU_03026 [Strigomonas culicis] diamond 168 48.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;