RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA663960", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA663960 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27871033 27871033 PRJNA663960_S_NODE_14145_length_300_cov_4.134387_g13909_i0 PRJNA663960 14145 300 4.134387 12.403161 Minicystis sp. 1971901 Bacteria Bacteria 74.7 8.28e-14   NR MFT3772917.1 1971901 g13909 i0 43 0.86 86 49 86 0 274 17 76 161 MFT3772917.1 YkgJ family cysteine cluster protein [Minicystis sp.] diamond 258 74.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis sp.
31377199 31377199 PRJNA663960_S_NODE_17356_length_280_cov_2.712446_g17120_i0 PRJNA663960 17356 280 2.712446 7.5948488 Labilithrix sp. 1971228 Bacteria Bacteria 43.1 0.0427   NR MBX3234237.1 1971228 g17120 i0 60 0.321428571428571 30 8 27.9 1 154 77 587 616 MBX3234237.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Labilithrix sp.] diamond 90 43.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
32673465 32673465 PRJNA663960_S_NODE_28760_length_226_cov_2.491620_g28524_i0 PRJNA663960 28760 226 2.49162 5.6310612 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 44.7 0.00607   NR RZO64811.1 2510337 g28524 i0 45.8 0.783185840707965 59 28 75.7 2 43 213 96 152 RZO64811.1 MAG: hypothetical protein EVA89_03645 [Sandaracinaceae bacterium] diamond 177 44.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;