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contig_metadata

32 rows where bioproject = "PRJNA663960" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA663960 · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456839 4456839 PRJNA663960_S_NODE_724_length_780_cov_3.557981_g480_i1 PRJNA663960 724 780 3.557981 27.7522518 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 1099 0   NTclustered gi|2028834772|gb|CP072333.1| 712435 g480 i1 92.327 525.576923076923 782 46 99 12 1 777 442742 443514 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 409950 1099 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
4990466 4990466 PRJNA663960_S_NODE_8144_length_354_cov_3.863192_g7908_i0 PRJNA663960 8144 354 3.863192 13.67569968 Bacteroidaceae 815 Bacteria Bacteria 460 4.689999999999999e-125   NTclustered gi|2098064349|gb|CP081898.1| 818 g7908 i0 90.113 5.00847457627119 354 35 100 0 1 354 6013916 6014269 Bacteroides thetaiotaomicron strain BFG-55 chromosome, complete genome blastn 1773 460 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron
11365512 11365512 PRJNA663960_S_NODE_14609_length_297_cov_4.032000_g14373_i0 PRJNA663960 14609 297 4.032 11.97504 Capnocytophaga 1016 Bacteria Bacteria 549 8.029999999999997e-152   NTclustered gi|1844455069|gb|MT505507.1| 1019 g14373 i0 100 99.993265993266 297 0 100 0 1 297 189 485 Capnocytophaga sputigena strain KCOM 3358 (=ChDC P009-2) 16S ribosomal RNA gene, partial sequence blastn 29698 549 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sputigena
12108177 12108177 PRJNA663960_S_NODE_51190_length_169_cov_1.729508_g50954_i0 PRJNA663960 51190 169 1.729508 2.92286852 Pedobacter heparinus 984 Bacteria Bacteria 54.7 0.004   NTclustered gi|255342900|gb|CP001681.1| 485917 g50954 i0 100 0.171597633136095 29 0 17 0 99 127 93393 93421 Pedobacter heparinus DSM 2366, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter heparinus
13382891 13382891 PRJNA663960_S_NODE_49411_length_172_cov_2.448000_g49175_i0 PRJNA663960 49411 172 2.448 4.21056 Christiangramia echinicola 279359 Bacteria Bacteria 52.8 0.014   NTclustered gi|1085804381|emb|LT629745.1| 279359 g49175 i0 100 0.162790697674419 28 0 16 0 92 119 1055053 1055026 Gramella echinicola strain Mar_2010_102 genome assembly, chromosome: I blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia echinicola
17206831 17206831 PRJNA663960_S_NODE_41194_length_190_cov_1.069930_g40958_i0 PRJNA663960 41194 190 1.06993 2.032867 Sphingobacterium multivorum 28454 Bacteria Bacteria 351 1.4399999999999997e-92   NTclustered gi|1986727426|gb|CP069793.1| 28454 g40958 i0 100 439.236842105263 190 0 100 0 1 190 172019 171830 Sphingobacterium multivorum strain FDAARGOS_1203 chromosome blastn 83455 351 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium multivorum
18481125 18481125 PRJNA663960_S_NODE_35995_length_203_cov_0.980769_g35759_i0 PRJNA663960 35995 203 0.980769 1.99096107 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 279 7.45e-71   NTclustered gi|2028834772|gb|CP072333.1| 712435 g35759 i0 91.626 33.4039408866995 203 16 100 1 1 203 443700 443901 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 6781 279 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
18481254 18481254 PRJNA663960_S_NODE_5215_length_405_cov_3.765363_g4979_i0 PRJNA663960 5215 405 3.765363 15.24972015 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 449 1.18e-121   NTclustered gi|2028834772|gb|CP072333.1| 712435 g4979 i0 86.732 1.00493827160494 407 50 100 3 1 405 1765715 1765311 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 407 449 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
18481301 18481301 PRJNA663960_S_NODE_595_length_826_cov_3.573813_g480_i0 PRJNA663960 595 826 3.573813 29.51969538 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 1362 0   NTclustered gi|2028834772|gb|CP072333.1| 712435 g480 i0 96.489 434.48789346247 826 26 100 3 1 826 443564 442742 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 358887 1362 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
22306097 22306097 PRJNA663960_S_NODE_4018_length_442_cov_7.324051_g3783_i0 PRJNA663960 4018 442 7.324051 32.372305420000004 Flavobacterium dauae 1563479 Bacteria Bacteria 56.5 0.003   NTclustered gi|2557430891|gb|CP130821.1| 1563479 g3783 i0 100 0.0678733031674208 30 0 7 0 287 316 1161409 1161438 Flavobacterium dauae strain TCH3-2 chromosome, complete genome blastn 30 56.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium dauae
22306260 22306260 PRJNA663960_S_NODE_8678_length_348_cov_2.983389_g8442_i0 PRJNA663960 8678 348 2.983389 10.38219372 Bacteroidales bacterium 2030927 Bacteria Bacteria 54.7 0.009   NTclustered gi|2621786220|emb|OY782678.1| 2030927 g8442 i0 100 0.0833333333333333 29 0 8 0 135 163 472981 472953 MAG: Bacteroidales bacterium isolate 1f9300ae-d6db-4a26-8fb7-1be2ee45184d genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
23581605 23581605 PRJNA663960_S_NODE_9559_length_338_cov_3.422680_g9323_i0 PRJNA663960 9559 338 3.42268 11.5686584 Porphyromonas pogonae 867595 Bacteria Bacteria 305 2.22e-78   NTclustered gi|2665661841|gb|CP143258.1| 867595 g9323 i0 83.14 409.62426035503 344 49 100 7 1 338 263845 264185 Porphyromonas pogonae strain PP01-1 chromosome, complete genome blastn 138453 305 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas pogonae
24854868 24854868 PRJNA663960_S_NODE_18640_length_272_cov_5.857778_g18404_i0 PRJNA663960 18640 272 5.857778 15.93315616 Hymenobacter sp. 5317J-9 2932250 Bacteria Bacteria 453 5.8600000000000006e-123   NTclustered gi|2221939013|gb|CP095050.1| 2932250 g18404 i0 96.691 314.511029411765 272 9 100 0 1 272 1964625 1964896 Hymenobacter sp. 5317J-9 chromosome, complete genome blastn 85547 453 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. 5317J-9
26606416 26606416 PRJNA663960_S_NODE_42421_length_187_cov_1.142857_g42185_i0 PRJNA663960 42421 187 1.142857 2.13714259 Bacteroidaceae bacterium 2212467 Bacteria Bacteria 52.8 4.98e-6   NR MBR3856713.1 2212467 g42185 i0 100 0.385026737967914 24 0 38.5 0 2 73 308 331 MBR3856713.1 hypothetical protein [Bacteroidaceae bacterium] diamond 72 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae   Bacteroidaceae bacterium
26891848 26891848 PRJNA663960_S_NODE_8941_length_345_cov_2.174497_g8705_i0 PRJNA663960 8941 345 2.174497 7.50201465 Prevotellaceae 171552 Bacteria Bacteria 99.8 2.18e-24   NR WP_074759972.1 171552 g8705 i0 66.7 1.3304347826087 75 25 65.2 0 119 343 3 77 WP_074759972.1 MULTISPECIES: DUF4134 domain-containing protein [Prevotellaceae] diamond 459 99.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae    
26954728 26954728 PRJNA663960_S_NODE_8742_length_347_cov_4.250000_g8506_i0 PRJNA663960 8742 347 4.25 14.7475 Bacteroidales bacterium 2030927 Bacteria Bacteria 212 2.68e-67   NR MEE0236624.1 2030927 g8506 i0 92.2 0.994236311239193 115 9 99.4 0 3 347 92 206 MEE0236624.1 CDP-alcohol phosphatidyltransferase family protein [Bacteroidales bacterium] diamond 345 212 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
26986422 26986422 PRJNA663960_S_NODE_46962_length_177_cov_1.569231_g46726_i0 PRJNA663960 46962 177 1.569231 2.77753887 Flavobacterium psychrophilum 96345 Bacteria Bacteria 117 3.98e-29   NR GAW90657.1 96345 g46726 i0 100 4 59 0 100 0 177 1 10 68 GAW90657.1 hypothetical protein FPS14_contig00081-0008 [Flavobacterium psychrophilum] diamond 708 117 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum
27018164 27018164 PRJNA663960_S_NODE_39682_length_193_cov_2.280822_g39446_i0 PRJNA663960 39682 193 2.280822 4.40198646 Sphingobacteriales bacterium 2044944 Bacteria Bacteria 41.6 0.0457   NR RYZ13587.1 2044944 g39446 i0 37 0.839378238341969 54 34 83.9 0 179 18 64 117 RYZ13587.1 MAG: type I polyketide synthase, partial [Sphingobacteriales bacterium] diamond 162 41.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales     Sphingobacteriales bacterium
27207671 27207671 PRJNA663960_S_NODE_10362_length_330_cov_5.024735_g10126_i0 PRJNA663960 10362 330 5.024735 16.5816255 Larkinella punicea 2315727 Bacteria Bacteria 46.6 0.00393   NR WP_114404768.1 2315727 g10126 i0 35 0.727272727272727 80 51 71.8 1 238 2 21 100 WP_114404768.1 nucleotide-diphospho-sugar transferase [Larkinella punicea] diamond 240 46.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Larkinella Larkinella punicea
27997573 27997573 PRJNA663960_S_NODE_36025_length_203_cov_0.980769_g35789_i0 PRJNA663960 36025 203 0.980769 1.99096107 Bacteroidales bacterium 2030927 Bacteria Bacteria 43.1 0.0164   NR MDR1112562.1 2030927 g35789 i0 34.1 1.30049261083744 44 29 65 0 149 18 530 573 MDR1112562.1 fibronectin type III domain-containing protein [Bacteroidales bacterium] diamond 264 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
28186652 28186652 PRJNA663960_S_NODE_60346_length_159_cov_1.366071_g60110_i0 PRJNA663960 60346 159 1.366071 2.17205289 Bacteroidales bacterium 2030927 Bacteria Bacteria 110 5.4300000000000006e-27   NR MDY6463363.1 2030927 g60110 i0 98.1 1.9622641509434 52 1 98.1 0 3 158 166 217 MDY6463363.1 serine hydrolase domain-containing protein [Bacteroidales bacterium] diamond 312 110 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
28407952 28407952 PRJNA663960_S_NODE_19946_length_265_cov_4.114679_g19710_i0 PRJNA663960 19946 265 4.114679 10.90389935 Prevotella lacticifex 2854755 Bacteria Bacteria 174 2.08e-48   NR WP_223927114.1 2854755 g19710 i0 96.6 1.96981132075472 87 3 98.5 0 3 263 966 1052 WP_223927114.1 leucine-rich repeat domain-containing protein [Prevotella lacticifex] diamond 522 174 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella lacticifex
28407953 28407953 PRJNA663960_S_NODE_36926_length_200_cov_2.000000_g36690_i0 PRJNA663960 36926 200 2 4 Bacteroidales bacterium 2030927 Bacteria Bacteria 77 1.72e-14   NR MBQ7899139.1 2030927 g36690 i0 85.4 0.615 41 6 61.5 0 123 1 520 560 MBQ7899139.1 hypothetical protein [Bacteroidales bacterium] diamond 123 77 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
29071153 29071153 PRJNA663960_S_NODE_11188_length_323_cov_2.873188_g10952_i0 PRJNA663960 11188 323 2.873188 9.28039724 Bacteroidota bacterium 1898104 Bacteria Bacteria 43.9 0.0368   NR MFH0894705.1 1898104 g10952 i0 40 0.557275541795666 60 33 52.9 1 75 245 194 253 MFH0894705.1 TonB-dependent receptor [Bacteroidota bacterium] diamond 180 43.9 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
29102653 29102653 PRJNA663960_S_NODE_12468_length_313_cov_1.917293_g12232_i0 PRJNA663960 12468 313 1.917293 6.00112709 Cecembia rubra 1485585 Bacteria Bacteria 115 3.57e-29   NR WP_304518276.1 1485585 g12232 i0 95 0.575079872204473 60 3 57.5 0 134 313 111 170 WP_304518276.1 MFS transporter, partial [Cecembia rubra] diamond 180 115 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia rubra
30081265 30081265 PRJNA663960_S_NODE_44572_length_182_cov_1.540741_g44336_i0 PRJNA663960 44572 182 1.540741 2.80414862 Bacteroidales bacterium 2030927 Bacteria Bacteria 43.9 0.00574   NR MCQ2327712.1 2030927 g44336 i0 55.3 0.774725274725275 47 19 74.2 2 24 158 125 171 MCQ2327712.1 endonuclease/exonuclease/phosphatase family protein [Bacteroidales bacterium] diamond 141 43.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
30713345 30713345 PRJNA663960_S_NODE_57114_length_162_cov_1.226087_g56878_i0 PRJNA663960 57114 162 1.226087 1.98626094 Cecembia calidifontis 1187080 Bacteria Bacteria 101 5.55e-26   NR WP_130274696.1 1187080 g56878 i0 98.1 0.981481481481482 53 1 98.1 0 2 160 14 66 WP_130274696.1 hypothetical protein [Cecembia calidifontis] diamond 159 101 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia calidifontis
31187007 31187007 PRJNA663960_S_NODE_36215_length_202_cov_1.645161_g35979_i0 PRJNA663960 36215 202 1.645161 3.32322522 Cecembia rubra 1485585 Bacteria Bacteria 95.5 1.9e-22   NR WP_106566092.1 1485585 g35979 i0 86.3 2.25742574257426 51 7 75.7 0 200 48 21 71 WP_106566092.1 ROK family protein [Cecembia rubra] diamond 456 95.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia rubra
32294835 32294835 PRJNA663960_S_NODE_11299_length_322_cov_3.178182_g11063_i0 PRJNA663960 11299 322 3.178182 10.23374604 Porphyromonadaceae bacterium 2049046 Bacteria Bacteria 46.6 0.00138   NR HAR37924.1 2049046 g11063 i0 50 0.354037267080745 38 19 35.4 0 10 123 83 120 HAR37924.1 hypothetical protein [Porphyromonadaceae bacterium] diamond 114 46.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae   Porphyromonadaceae bacterium
32358020 32358020 PRJNA663960_S_NODE_29279_length_224_cov_2.881356_g29043_i0 PRJNA663960 29279 224 2.881356 6.45423744 Cecembia rubra 1485585 Bacteria Bacteria 139 2.38e-37   NR WP_106568352.1 1485585 g29043 i0 95.9 0.991071428571429 74 3 99.1 0 223 2 92 165 WP_106568352.1 acyclic terpene utilization AtuA family protein [Cecembia rubra] diamond 222 139 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia rubra
32496620 32496620 PRJNA663960_S_NODE_6039_length_388_cov_4.621701_g5803_i0 PRJNA663960 6039 388 4.621701 17.93219988 Candidatus Scybalocola (ex Gilroy et al. 2022) 3082845 Bacteria Bacteria 257 1.84e-85   NR MEE1063605.1 2748031 g5803 i0 99.2 1.97938144329897 128 1 99 0 385 2 1 128 MEE1063605.1 3-deoxy-manno-octulosonate cytidylyltransferase [Paludibacteraceae bacterium] diamond 768 257 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Paludibacteraceae   Paludibacteraceae bacterium
32547858 32547858 PRJNA663960_S_NODE_30379_length_220_cov_2.364162_g30143_i0 PRJNA663960 30379 220 2.364162 5.2011564 Fibrivirga algicola 2950420 Bacteria Bacteria 125 1.2499999999999999e-34   NR WP_208295512.1 2950420 g30143 i0 98.5 1.77272727272727 65 1 88.6 0 2 196 105 169 WP_208295512.1 ribosome maturation factor RimP [Fibrivirga algicola] diamond 390 125 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Fibrivirga Fibrivirga algicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;