RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA663960", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA663960 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27176075 27176075 PRJNA663960_S_NODE_24462_length_244_cov_1.294416_g24226_i0 PRJNA663960 24462 244 1.294416 3.15837504 Borreliella garinii 29519 Bacteria Bacteria 41.6 0.034   NR WP_210382073.1 29519 g24226 i0 37.7 0.75 61 38 75 0 1 183 12 72 WP_210382073.1 hypothetical protein, partial [Borreliella garinii] diamond 183 41.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella garinii
28502638 28502638 PRJNA663960_S_NODE_37007_length_200_cov_1.437908_g36771_i0 PRJNA663960 37007 200 1.437908 2.875816 Spirochaetia bacterium 2053615 Bacteria Bacteria 42 0.0395   NR GHV75251.1 2053615 g36771 i0 41.4 0.87 58 34 87 0 187 14 389 446 GHV75251.1 MATE family efflux transporter [Spirochaetia bacterium] diamond 174 42 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;