RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA663960", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA663960 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19755780 19755780 PRJNA663960_S_NODE_51276_length_169_cov_1.565574_g51040_i0 PRJNA663960 51276 169 1.565574 2.64582006 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 285 1.28e-72   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g51040 i0 97.041 109.680473372781 169 5 100 0 1 169 3557345 3557513 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 18536 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
21031416 21031416 PRJNA663960_S_NODE_59817_length_160_cov_0.902655_g59581_i0 PRJNA663960 59817 160 0.902655 1.444248 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 289 9.29e-74   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g59581 i0 99.371 111.68125 159 1 99 0 2 160 3557675 3557517 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 17869 289 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
28609492 28609492 PRJNA663960_S_NODE_12507_length_312_cov_5.286792_g12271_i0 PRJNA663960 12507 312 5.286792 16.49479104 Cerasicoccaceae 3056374 Bacteria Bacteria 44.3 0.0225   NR WP_220622161.1 2866311 g12271 i0 47.6 1.23076923076923 42 21 39.4 1 232 110 111 152 WP_220622161.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein [Ruficoccus sp. ZRK36] diamond 384 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Ruficoccus Ruficoccus sp. ZRK36

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;