RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA663960", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA663960 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1904759 1904759 PRJNA663960_S_NODE_22462_length_253_cov_1.733010_g22226_i0 PRJNA663960 22462 253 1.73301 4.3845153 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g22226 i0 100 0.110671936758893 28 0 11 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13382595 13382595 PRJNA663960_S_NODE_10771_length_327_cov_1.385714_g10535_i0 PRJNA663960 10771 327 1.385714 4.53128478 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.031   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10535 i0 100 0.0856269113149847 28 0 9 0 300 327 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13382687 13382687 PRJNA663960_S_NODE_22051_length_255_cov_1.716346_g21815_i0 PRJNA663960 22051 255 1.716346 4.3766823 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g21815 i0 100 0.109803921568627 28 0 11 0 228 255 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
21031231 21031231 PRJNA663960_S_NODE_35477_length_204_cov_1.949045_g35241_i0 PRJNA663960 35477 204 1.949045 3.9760518 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g35241 i0 100 0.137254901960784 28 0 14 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;