RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA662254" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5731708 5731708 PRJNA662254_P_NODE_24685_length_332_cov_1.378378_g24034_i0 PRJNA662254 24685 332 1.378378 4.57621496 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 4.02e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g24034 i0 90.385 0.701807228915663 52 2 15 3 176 226 2610 2561 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29638894 29638894 PRJNA662254_P_NODE_31370_length_297_cov_0.973214_g30719_i0 PRJNA662254 31370 297 0.973214 2.89044558 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 43.1 0.00692   NR XP_001580371.1 412133 g30719 i0 32.2 0.595959595959596 59 40 59.6 0 256 80 9 67 XP_001580371.1 EF-hand domain-containing protein [Trichomonas vaginalis G3] diamond 177 43.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;