RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA662254" and tax_phylum = "Negarnaviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA662254 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1161901 1161901 PRJNA662254_P_NODE_541_length_2199_cov_4.032926_g419_i0 PRJNA662254 541 2199 4.032926 88.68404274 Zebrafish influenza B-like virus RQ01 Viruses Viruses 1507 0   NTclustered gi|1626609665|gb|MK857730.1| RQ01 g419 i0 79.074 100.136880400182 2203 453 100 8 1 2199 2251 53 Influenza B virus (B/Connecticut/01/2019) segment 1 polymerase PB1 (PB1) gene, complete cds blastn 220201 1507 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Zebrafish influenza B-like virus
13382358 13382358 PRJNA662254_P_NODE_41551_length_260_cov_2.299465_g40900_i0 PRJNA662254 41551 260 2.299465 5.978609 Orthoavulavirus javaense 3051375 Viruses Viruses 475 1.1899999999999999e-129   NTclustered gi|1679362523|gb|MH996952.1| 2560319 g40900 i0 100 99.4153846153846 257 0 99 0 1 257 257 1 Avian paramyxovirus 1 isolate chicken/Nigeria/Ibadan/VRD Ibadan/2/1973, partial genome blastn 25848 475 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
17206257 17206257 PRJNA662254_P_NODE_2674_length_1091_cov_31.944990_g2260_i0 PRJNA662254 2674 1091 31.94499 348.5198409 Zebrafish influenza B-like virus RQ01 Viruses Viruses 499 3.2999999999999998e-136   NTclustered gi|2413738156|gb|OQ034364.1| RQ01 g2260 i0 75.362 97.1200733272227 1104 236 99 32 1 1090 1082 1 Influenza B virus (B/Great Lakes/1739/1954) segment 8 nuclear export protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds blastn 105958 499 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Zebrafish influenza B-like virus
17739882 17739882 PRJNA662254_P_NODE_874_length_1830_cov_32.645987_g686_i0 PRJNA662254 874 1830 32.645987 597.4215621 Zebrafish influenza B-like virus RQ01 Viruses Viruses 928 0   NTclustered gi|4760940|gb|AF100359.1|AF100359 RQ01 g686 i0 77.607 84.8060109289618 1563 329 85 17 249 1802 193 1743 Influenza B virus B/Victoria/2/87 segment 5 nucleoprotein (NP) gene, complete cds blastn 155195 929 0.998923573735199 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Zebrafish influenza B-like virus
20288286 20288286 PRJNA662254_P_NODE_476_length_2296_cov_2.701754_g366_i0 PRJNA662254 476 2296 2.701754 62.03227184 Zebrafish influenza B-like virus RQ01 Viruses Viruses 1411 0   NTclustered gi|119516769|gb|CY018794.1| RQ01 g366 i0 78.532 94.2334494773519 2166 451 94 14 124 2282 2159 1 Influenza B virus (B/Hong Kong/03/1992) segment 3, complete sequence blastn 216360 1423 0.99156711173577 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Zebrafish influenza B-like virus
21563884 21563884 PRJNA662254_P_NODE_2297_length_1177_cov_43.203804_g1918_i0 PRJNA662254 2297 1177 43.203804 508.50877308 Zebrafish influenza B-like virus RQ01 Viruses Viruses 617 9.439999999999999e-172   NTclustered gi|2413738033|gb|OQ034355.1| RQ01 g1918 i0 80.024 71.4265080713679 841 162 71 6 4 841 2 839 Influenza B virus (B/reassortant/ISMMS M2P4-3 (B/Pennsylvania/5/2007 x B/Texas/06/2011 x B/Michigan/1/1971 x B/Malaysia/2506/2004-MA)) segment 7 matrix protein 1 (M1) and BM2 protein (BM2) genes, complete cds blastn 84069 617 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Zebrafish influenza B-like virus
29229021 29229021 PRJNA662254_P_NODE_489_length_2268_cov_3.131663_g378_i0 PRJNA662254 489 2268 3.131663 71.02611684 Zebrafish influenza B-like virus RQ01 Viruses Viruses 1383 0   NR 6T0W_C RQ01 g378 i0 90.3 0.992063492063492 750 73 99.2 0 2251 2 10 759 6T0W_C Chain C, Polymerase PB2 [Influenza B virus] diamond 2250 1383 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Zebrafish influenza B-like virus
29260134 29260134 PRJNA662254_P_NODE_1289_length_1542_cov_29.628999_g1023_i0 PRJNA662254 1289 1542 29.628999 456.87916458 Zebrafish influenza B-like virus RQ01 Viruses Viruses 576 1.6099999999999998e-200   NR AVM87625.1 RQ01 g1023 i0 64 0.918287937743191 472 165 90.9 3 1482 82 1 472 AVM87625.1 NA [Wuhan spiny eel influenza virus] diamond 1416 576 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Zebrafish influenza B-like virus
30555197 30555197 PRJNA662254_P_NODE_873_length_1831_cov_40.051195_g685_i0 PRJNA662254 873 1831 40.051195 733.33738045 Zebrafish influenza B-like virus RQ01 Viruses Viruses 713 1.09e-251   NR AVM87624.1 RQ01 g685 i0 62.6 0.932277444019661 569 209 93.1 3 75 1778 3 568 AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] diamond 1707 713 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Zebrafish influenza B-like virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;