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contig_metadata

29 rows where bioproject = "PRJNA662254", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 29 ✖

tax_kingdom 1

  • Metazoa · 29 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456163 4456163 PRJNA662254_P_NODE_27484_length_316_cov_1.238683_g26833_i0 PRJNA662254 27484 316 1.238683 3.91423828 Caenorhabditis remanei 31234 Nematoda Nematoda 152 1.12e-41   NR XP_003115169.1 31234 g26833 i0 80 17.6582278481013 95 19 90.2 0 288 4 4 98 XP_003115169.1 hypothetical protein GCK72_001866 [Caenorhabditis remanei] diamond 5580 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
9556718 9556718 PRJNA662254_P_NODE_16148_length_408_cov_1.459701_g15497_i0 PRJNA662254 16148 408 1.459701 5.95558008 Metazoa 33208 Nematoda Nematoda 146 9.63e-39   NR CAD5222489.1 6326 g15497 i0 52.9 8 136 62 99.3 2 3 407 333 467 CAD5222489.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 3264 146 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
12641192 12641192 PRJNA662254_P_NODE_66150_length_238_cov_2.048485_g65499_i0 PRJNA662254 66150 238 2.048485 4.8753943 Ceratoplectus 290129 Nematoda Nematoda 412 8.51e-111   NTclustered gi|460423923|gb|KC306538.1| 554024 g65499 i0 97.899 100.008403361345 238 5 100 0 1 238 133 370 Nematoda environmental sample clone BT_Euk_C8 18S ribosomal RNA gene, partial sequence blastn 23802 412 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
13382345 13382345 PRJNA662254_P_NODE_37051_length_275_cov_2.287129_g36400_i0 PRJNA662254 37051 275 2.287129 6.28960475 Diploscapter sp. JU359 479134 Nematoda Nematoda 508 1.2499999999999999e-139   NTclustered gi|158821895|gb|EU195959.1| 479134 g36400 i0 100 93.9672727272727 275 0 100 0 1 275 1547 1273 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 25841 508 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
23580858 23580858 PRJNA662254_P_NODE_11559_length_485_cov_2.563107_g10908_i0 PRJNA662254 11559 485 2.563107 12.43106895 Metazoa 33208 Nematoda Nematoda 213 4.17e-68   NR CAD5227959.1 6326 g10908 i0 68.9 15.6989690721649 148 46 91.5 0 460 17 8 155 CAD5227959.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 7614 213 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
23581065 23581065 PRJNA662254_P_NODE_60219_length_243_cov_3.058824_g59568_i0 PRJNA662254 60219 243 3.058824 7.43294232 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 6.7e-36   NR KRY42289.1 6334 g59568 i0 90.1 1694.88888888889 81 8 100 0 243 1 215 295 KRY42289.1 histone H3, partial [Trichinella spiralis] diamond 411858 134 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
23581101 23581101 PRJNA662254_P_NODE_65619_length_241_cov_0.916667_g64968_i0 PRJNA662254 65619 241 0.916667 2.20916747 Rhabditida 6236 Nematoda Nematoda 147 5.94e-40   NR VDP01489.1 6339 g64968 i0 82.1 8.75103734439834 78 14 97.1 0 235 2 264 341 VDP01489.1 unnamed protein product, partial [Heligmosomoides polygyrus] diamond 2109 147 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
23581106 23581106 PRJNA662254_P_NODE_66019_length_240_cov_2.353293_g65368_i0 PRJNA662254 66019 240 2.353293 5.6479032 Strongyloides ratti 34506 Nematoda Nematoda 248 2.57e-61   NTclustered gi|1376144067|ref|XM_024652464.1| 34506 g65368 i0 85.593 101.029166666667 236 34 98 0 3 238 94 329 Strongyloides ratti Histone H3 (SRAE_2000150400), partial mRNA blastn 24247 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24113881 24113881 PRJNA662254_P_NODE_34059_length_286_cov_1.145540_g33408_i0 PRJNA662254 34059 286 1.14554 3.2762444 root 1 Root_unresolved Root_unresolved 63.9 1.22e-5   NTclustered gi|162280658|gb|EU163897.1| 6239 g33408 i0 95 8.74475524475525 40 2 14 0 80 119 40328 40367 Caenorhabditis elegans strain CB4856 genomic sequence blastn 2501 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27144191 27144191 PRJNA662254_P_NODE_23682_length_339_cov_1.135338_g23031_i0 PRJNA662254 23682 339 1.135338 3.84879582 Caenorhabditis angaria 860376 Nematoda Nematoda 134 1.57e-35   NR CAI5441576.1 860376 g23031 i0 58.9 0.991150442477876 112 43 98.2 2 3 335 70 179 CAI5441576.1 unnamed protein product [Caenorhabditis angaria] diamond 336 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
27788652 27788652 PRJNA662254_P_NODE_58964_length_244_cov_0.900585_g58313_i0 PRJNA662254 58964 244 0.900585 2.1974274 Rhabditidae 6243 Nematoda Nematoda 44.3 0.0104   NR ULU03743.1 6238 g58313 i0 59.3 7.11885245901639 27 11 33.2 0 188 108 385 411 ULU03743.1 hypothetical protein L3Y34_016903 [Caenorhabditis briggsae] diamond 1737 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
28186607 28186607 PRJNA662254_P_NODE_24726_length_332_cov_1.162162_g24075_i0 PRJNA662254 24726 332 1.162162 3.85837784 Caenorhabditis angaria 860376 Nematoda Nematoda 49.3 4.95e-4   NR CAI5449284.1 860376 g24075 i0 32.9 0.768072289156627 85 52 76.8 2 299 45 229 308 CAI5449284.1 unnamed protein product [Caenorhabditis angaria] diamond 255 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
28988635 28988635 PRJNA662254_P_NODE_56128_length_246_cov_0.890173_g55477_i0 PRJNA662254 56128 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 95.9 1.59e-21   NR PAV89606.1 2018661 g55477 i0 58.8 2.96341463414634 80 30 93.9 1 15 245 178 257 PAV89606.1 hypothetical protein WR25_19649 [Diploscapter pachys] diamond 729 95.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
29146606 29146606 PRJNA662254_P_NODE_62789_length_242_cov_0.911243_g62138_i0 PRJNA662254 62789 242 0.911243 2.20520806 Rhabditida 6236 Nematoda Nematoda 102 2.7599999999999995e-23   NR VDM40129.1 6265 g62138 i0 67.9 14.3801652892562 84 20 99.2 4 2 241 3458 3538 VDM40129.1 unnamed protein product [Toxocara canis] diamond 3480 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
29291922 29291922 PRJNA662254_P_NODE_57349_length_245_cov_0.895349_g56698_i0 PRJNA662254 57349 245 0.895349 2.19360505 Aphelenchoides fujianensis 1052528 Nematoda Nematoda 82.4 3.82e-17   NR KAI6240853.1 1052528 g56698 i0 50 1.89795918367347 76 36 90.6 1 224 3 1 76 KAI6240853.1 Cysteine dioxygenase [Aphelenchoides fujianensis] diamond 465 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis
30112923 30112923 PRJNA662254_P_NODE_47372_length_250_cov_0.870056_g46721_i0 PRJNA662254 47372 250 0.870056 2.17514 Meloidogyne enterolobii 390850 Nematoda Nematoda 47 0.00134   NR CAD2185782.1 390850 g46721 i0 55.1 2.724 49 14 49.2 2 244 122 269 317 CAD2185782.1 unnamed protein product [Meloidogyne enterolobii] diamond 681 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
30156515 30156515 PRJNA662254_P_NODE_47752_length_250_cov_0.870056_g47101_i0 PRJNA662254 47752 250 0.870056 2.17514 Rhabditida 6236 Nematoda Nematoda 49.7 1.39e-4   NR PIO76719.1 45464 g47101 i0 64.7 0.756 34 12 40.8 0 32 133 104 137 PIO76719.1 CDC50 family protein, LEM3 family [Teladorsagia circumcincta] diamond 189 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta
30586773 30586773 PRJNA662254_P_NODE_20333_length_363_cov_2.920690_g19682_i0 PRJNA662254 20333 363 2.92069 10.6021047 Meloidogyne enterolobii 390850 Nematoda Nematoda 65.9 5.43e-10   NR CAK5090020.1 390850 g19682 i0 47.7 1.07438016528926 65 34 53.7 0 120 314 146 210 CAK5090020.1 unnamed protein product [Meloidogyne enterolobii] diamond 390 65.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
30649896 30649896 PRJNA662254_P_NODE_31553_length_296_cov_1.165919_g30902_i0 PRJNA662254 31553 296 1.165919 3.45112024 Onchocerca flexuosa 387005 Nematoda Nematoda 96.7 1.4e-21   NR OZC05795.1 387005 g30902 i0 86 8.09797297297297 50 7 50.7 0 296 147 134 183 OZC05795.1 hypothetical protein X798_07230 [Onchocerca flexuosa] diamond 2397 96.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca flexuosa
30808122 30808122 PRJNA662254_P_NODE_25134_length_329_cov_1.804688_g24483_i0 PRJNA662254 25134 329 1.804688 5.93742352 Toxocara canis 6265 Nematoda Nematoda 43.9 0.0381   NR KHN73621.1 6265 g24483 i0 64.3 0.51063829787234 28 10 25.5 0 323 240 518 545 KHN73621.1 ATP synthase subunit beta, mitochondrial [Toxocara canis] diamond 168 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
30808157 30808157 PRJNA662254_P_NODE_57734_length_245_cov_0.895349_g57083_i0 PRJNA662254 57734 245 0.895349 2.19360505 Diploscapter pachys 2018661 Nematoda Nematoda 178 8.4e-50   NR PAV83172.1 2018661 g57083 i0 100 0.991836734693878 81 0 99.2 0 244 2 823 903 PAV83172.1 hypothetical protein WR25_09055 [Diploscapter pachys] diamond 243 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
30851839 30851839 PRJNA662254_P_NODE_31094_length_298_cov_1.026667_g30443_i0 PRJNA662254 31094 298 1.026667 3.05946766 Trichinella 6333 Nematoda Nematoda 126 7.61e-33   NR KRY28464.1 6334 g30443 i0 61.6 12.9362416107383 99 38 99.7 0 1 297 85 183 KRY28464.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Trichinella spiralis] diamond 3855 127 0.992125984251969 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
30851845 30851845 PRJNA662254_P_NODE_47054_length_250_cov_0.870056_g46403_i0 PRJNA662254 47054 250 0.870056 2.17514 Onchocercidae 6296 Nematoda Nematoda 80.1 5.23e-17   NR VDM13756.1 6293 g46403 i0 73.2 5.4 56 15 67.2 0 78 245 75 130 VDM13756.1 unnamed protein product [Wuchereria bancrofti] diamond 1350 80.9 0.990111248454882 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
30966302 30966302 PRJNA662254_P_NODE_64774_length_241_cov_0.916667_g64123_i0 PRJNA662254 64774 241 0.916667 2.20916747 Pristionchus entomophagus 358040 Nematoda Nematoda 46.2 0.00211   NR GMS86499.1 358040 g64123 i0 47.4 1.87966804979253 38 20 47.3 0 232 119 148 185 GMS86499.1 hypothetical protein PENTCL1PPCAC_8674, partial [Pristionchus entomophagus] diamond 453 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
31598610 31598610 PRJNA662254_P_NODE_38936_length_269_cov_1.178571_g38285_i0 PRJNA662254 38936 269 1.178571 3.17035599 Trichuris suis 68888 Nematoda Nematoda 105 5.46e-24   NR KFD72334.1 68888 g38285 i0 54.4 6.07806691449814 90 40 99.3 1 269 3 253 342 KFD72334.1 hypothetical protein M514_11619 [Trichuris suis] diamond 1635 105 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
31882991 31882991 PRJNA662254_P_NODE_23977_length_337_cov_1.045455_g23326_i0 PRJNA662254 23977 337 1.045455 3.52318335 Caenorhabditis remanei 31234 Nematoda Nematoda 100 2.4e-22   NR XP_003094567.2 31234 g23326 i0 58 3.40949554896142 88 36 78.3 1 60 323 16 102 XP_003094567.2 hypothetical protein GCK72_011698 [Caenorhabditis remanei] diamond 1149 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
32116868 32116868 PRJNA662254_P_NODE_30338_length_301_cov_1.491228_g29687_i0 PRJNA662254 30338 301 1.491228 4.48859628 Caenorhabditis 6237 Nematoda Nematoda 82 3.52e-17   NR NP_498774.1 6239 g29687 i0 54.7 6.0797342192691 86 38 85.7 1 7 264 76 160 NP_498774.1 Large ribosomal subunit protein eL21 [Caenorhabditis elegans] diamond 1830 82 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
32370086 32370086 PRJNA662254_P_NODE_53899_length_247_cov_0.885057_g53248_i0 PRJNA662254 53899 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 6.04e-5   NR CAI5445666.1 860376 g53248 i0 52.5 0.959514170040486 40 16 48.6 1 241 122 163 199 CAI5445666.1 unnamed protein product [Caenorhabditis angaria] diamond 237 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
32484433 32484433 PRJNA662254_P_NODE_53539_length_247_cov_0.885057_g52888_i0 PRJNA662254 53539 247 0.885057 2.18609079 Mesorhabditis belari 2138241 Nematoda Nematoda 68.6 1.73e-11   NR CAJ0937159.1 2138241 g52888 i0 39.7 0.947368421052632 78 47 94.7 0 242 9 96 173 CAJ0937159.1 unnamed protein product, partial [Mesorhabditis belari] diamond 234 68.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;