RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA662254", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25388402 25388402 PRJNA662254_P_NODE_4920_length_784_cov_1.461322_g4357_i0 PRJNA662254 4920 784 1.461322 11.45676448 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 394 1.58e-135   NR XP_002774056.1 423536 g4357 i0 73.4 0.979591836734694 256 68 98 0 783 16 40 295 XP_002774056.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 768 394 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
27745049 27745049 PRJNA662254_P_NODE_10324_length_517_cov_1.599099_g9675_i0 PRJNA662254 10324 517 1.599099 8.26734183 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 275 4.2e-90   NR XP_002774056.1 423536 g9675 i0 77.6 0.986460348162476 170 38 98.6 0 514 5 141 310 XP_002774056.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 510 275 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
29955085 29955085 PRJNA662254_P_NODE_17731_length_389_cov_1.332278_g17080_i0 PRJNA662254 17731 389 1.332278 5.18256142 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 50.4 6.11e-5   NR XP_002777383.1 423536 g17080 i0 57.8 1.61182519280206 45 19 34.7 0 3 137 67 111 XP_002777383.1 cyclophilin 1, putative [Perkinsus marinus ATCC 50983] diamond 627 50.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;