RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA662254", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA662254 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8281626 8281626 PRJNA662254_P_NODE_65867_length_241_cov_0.916667_g65216_i0 PRJNA662254 65867 241 0.916667 2.20916747 Lentisphaerota bacterium 1932692 Bacteria Bacteria 122 3.2699999999999995e-31   NR MCA1808609.1 1932692 g65216 i0 78.8 0.995850622406639 80 17 99.6 0 2 241 212 291 MCA1808609.1 transaldolase [Lentisphaerota bacterium] diamond 240 122 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
27934310 27934310 PRJNA662254_P_NODE_49065_length_249_cov_0.875000_g48414_i0 PRJNA662254 49065 249 0.875 2.17875 Lentisphaeria bacterium 2053569 Bacteria Bacteria 43.1 0.0226   NR MDP6450047.1 2053569 g48414 i0 50 0.506024096385542 42 21 50.6 0 242 117 155 196 MDP6450047.1 hypothetical protein [Lentisphaeria bacterium] diamond 126 43.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31851335 31851335 PRJNA662254_P_NODE_55797_length_246_cov_0.890173_g55146_i0 PRJNA662254 55797 246 0.890173 2.18982558 Lentisphaerota bacterium 1932692 Bacteria Bacteria 119 2.39e-29   NR MEI6423468.1 1932692 g55146 i0 68.8 0.975609756097561 80 25 97.6 0 245 6 94 173 MEI6423468.1 glycosyltransferase [Lentisphaerota bacterium] diamond 240 119 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;