RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA662254", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA662254 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456249 4456249 PRJNA662254_P_NODE_49424_length_249_cov_0.875000_g48773_i0 PRJNA662254 49424 249 0.875 2.17875 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 398 2.51e-106   NTclustered gi|2874253877|emb|OY969932.1| 176233 g48773 i0 95.565 2.69879518072289 248 11 99 0 1 248 588165 588412 MAG: uncultured Methanobacteriaceae archaeon isolate MFD09286.bin.c.5 genome assembly, chromosome: 1 blastn 672 398 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
14657180 14657180 PRJNA662254_P_NODE_20792_length_360_cov_1.073171_g20141_i0 PRJNA662254 20792 360 1.073171 3.8634156 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 555 2.1299999999999994e-153   NTclustered gi|2874253877|emb|OY969932.1| 176233 g20141 i0 94.444 1 360 20 100 0 1 360 902531 902172 MAG: uncultured Methanobacteriaceae archaeon isolate MFD09286.bin.c.5 genome assembly, chromosome: 1 blastn 360 555 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
28755203 28755203 PRJNA662254_P_NODE_57547_length_245_cov_0.895349_g56896_i0 PRJNA662254 57547 245 0.895349 2.19360505 Methanobacterium lacus 877455 Archaea Archaea 59.7 6.63e-9   NR WP_013644817.1 877455 g56896 i0 50.9 0.673469387755102 55 26 67.3 1 81 245 33 86 WP_013644817.1 hypothetical protein [Methanobacterium lacus] diamond 165 59.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium lacus
31724857 31724857 PRJNA662254_P_NODE_47517_length_250_cov_0.870056_g46866_i0 PRJNA662254 47517 250 0.870056 2.17514 uncultured Methanobacterium sp. 176306 Archaea Archaea 78.6 1.01e-14   NR WP_319374304.1 176306 g46866 i0 50 3.936 82 41 98.4 0 2 247 441 522 WP_319374304.1 PocR ligand-binding domain-containing protein [uncultured Methanobacterium sp.] diamond 984 78.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;