RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA662254" and tax_clade = "Human papillomavirus types"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 6 ✖

bioproject 1

  • PRJNA662254 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3713655 3713655 PRJNA662254_P_NODE_4403_length_836_cov_2.581913_g3854_i0 PRJNA662254 4403 836 2.581913 21.58479268 Alphapapillomavirus 333750 Viruses Viruses 1533 0   NTclustered gi|2416400414|gb|OP721162.1| 10566 g3854 i0 99.761 99.9964114832536 836 2 100 0 1 836 1454 619 MAG: Human papillomavirus isolate HSIL33_seq4 genomic sequence blastn 83597 1544 0.992875647668394 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
6265716 6265716 PRJNA662254_P_NODE_24005_length_336_cov_4.684411_g23354_i0 PRJNA662254 24005 336 4.684411 15.73962096 Alphapapillomavirus 333750 Viruses Viruses 621 1.9299999999999997e-173   NTclustered gi|2416400550|gb|OP721231.1| 10566 g23354 i0 100 100 336 0 100 0 1 336 1213 1548 MAG: Human papillomavirus isolate NT08_seq6 genomic sequence blastn 33600 621 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
16464742 16464742 PRJNA662254_P_NODE_2493_length_1130_cov_3.087985_g2099_i0 PRJNA662254 2493 1130 3.087985 34.8942305 Alphapapillomavirus 333750 Viruses Viruses 2087 0   NTclustered gi|2416400464|gb|OP721187.1| 10566 g2099 i0 100 100.011504424779 1130 0 100 0 1 1130 356 1485 MAG: Human papillomavirus isolate LSIL23_seq5 genomic sequence blastn 113013 2087 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
22839319 22839319 PRJNA662254_P_NODE_12198_length_472_cov_1.433584_g11547_i0 PRJNA662254 12198 472 1.433584 6.76651648 Alphapapillomavirus 333750 Viruses Viruses 872 0   NTclustered gi|184383|gb|M73258.1|HUMHPVME18 10566 g11547 i0 100 90.1758474576271 472 0 100 0 1 472 5985 5514 Human cellular DNA/Human papillomavirus proviral DNA blastn 42563 872 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
22839336 22839336 PRJNA662254_P_NODE_33058_length_289_cov_1.782407_g32407_i0 PRJNA662254 33058 289 1.782407 5.15115623 Alphapapillomavirus 333750 Viruses Viruses 534 2.18e-147   NTclustered gi|2416400414|gb|OP721162.1| 10566 g32407 i0 100 99.9930795847751 289 0 100 0 1 289 608 320 MAG: Human papillomavirus isolate HSIL33_seq4 genomic sequence blastn 28898 534 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
24113861 24113861 PRJNA662254_P_NODE_22019_length_350_cov_1.667870_g21368_i0 PRJNA662254 22019 350 1.66787 5.837545 Alphapapillomavirus 333750 Viruses Viruses 641 1.5399999999999996e-179   NTclustered gi|184383|gb|M73258.1|HUMHPVME18 10566 g21368 i0 99.714 98.1342857142857 350 1 100 0 1 350 5486 5137 Human cellular DNA/Human papillomavirus proviral DNA blastn 34347 647 0.990726429675425 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;