RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA662254", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA662254 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23581059 23581059 PRJNA662254_P_NODE_59379_length_244_cov_0.900585_g58728_i0 PRJNA662254 59379 244 0.900585 2.1974274 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 165 2.71e-36   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g58728 i0 88.889 7.73770491803279 135 13 55 2 110 243 768818 768951 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 1888 165 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
26638174 26638174 PRJNA662254_P_NODE_52421_length_248_cov_0.874286_g51770_i0 PRJNA662254 52421 248 0.874286 2.16822928 Rubrivirga marina 1196024 Bacteria Bacteria 43.9 0.0157   NR WP_095509015.1 1196024 g51770 i0 40 0.967741935483871 80 41 96.8 2 6 245 762 834 WP_095509015.1 T9SS type A sorting domain-containing protein [Rubrivirga marina] diamond 240 43.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;