RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA661142" and tax_phylum = "Candidatus Rokuibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA661142 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1904287 1904287 PRJNA661142_P_NODE_6262_length_307_cov_1.186047_g6197_i0 PRJNA661142 6262 307 1.186047 3.64116429 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 184 7.859999999999999e-54   NR MBM4441828.1 2053607 g6197 i0 89.1 0.986970684039088 101 11 98.7 0 3 305 20 120 MBM4441828.1 NAD-dependent malic enzyme [Candidatus Rokuibacteriota bacterium] diamond 303 184 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
15931030 15931030 PRJNA661142_P_NODE_7473_length_278_cov_0.890830_g7408_i0 PRJNA661142 7473 278 0.89083 2.4765074 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 87.8 8.45e-19   NR PYM36172.1 2053607 g7408 i0 53.3 3.99280575539568 92 43 99.3 0 276 1 87 178 PYM36172.1 MAG: RNA polymerase subunit sigma [Candidatus Rokuibacteriota bacterium] diamond 1110 87.8 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
27946431 27946431 PRJNA661142_P_NODE_11685_length_166_cov_0.871795_g11620_i0 PRJNA661142 11685 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 58.2 4.81e-8   NR OGK79907.1 1802096 g11620 i0 55.8 5.54819277108434 52 23 94 0 2 157 380 431 OGK79907.1 MAG: hypothetical protein A2050_08790 [Candidatus Rokubacteria bacterium GWA2_73_35] diamond 921 58.5 0.994871794871795 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium GWA2_73_35
32168053 32168053 PRJNA661142_P_NODE_7658_length_274_cov_0.906667_g7593_i0 PRJNA661142 7658 274 0.906667 2.48426758 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 179 2.38e-51   NR MBI2207293.1 2053607 g7593 i0 91.1 3.94160583941606 90 8 98.5 0 5 274 411 500 MBI2207293.1 acetolactate synthase [Candidatus Rokuibacteriota bacterium] diamond 1080 179 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;