RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA661142" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA661142 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5731530 5731530 PRJNA661142_P_NODE_10405_length_202_cov_2.000000_g10340_i0 PRJNA661142 10405 202 2 4.04 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 324 3.38e-84   NTclustered gi|922689899|gb|CP012410.1| 712357 g10340 i0 95.545 147.044554455446 202 9 100 0 1 202 52810 53011 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 29703 324 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
7006767 7006767 PRJNA661142_P_NODE_7186_length_284_cov_2.170213_g7121_i0 PRJNA661142 7186 284 2.170213 6.16340492 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 477 3.649999999999999e-130   NTclustered gi|922689899|gb|CP012410.1| 712357 g7121 i0 100 6.05281690140845 258 0 91 0 1 258 1648275 1648532 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 1719 477 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
17206136 17206136 PRJNA661142_P_NODE_1594_length_602_cov_58.989150_g1534_i0 PRJNA661142 1594 602 58.98915 355.114683 Fusobacterium hwasookii 1583098 Bacteria Bacteria 819 0   NTclustered gi|958162200|gb|CP013331.1| 1307442 g1534 i0 91.211 100.154485049834 603 51 100 2 1 602 329549 330150 Fusobacterium hwasookii ChDC F174, complete genome blastn 60293 819 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
18480501 18480501 PRJNA661142_P_NODE_4155_length_383_cov_2.901198_g4090_i0 PRJNA661142 4155 383 2.901198 11.11158834 Pseudoleptotrichia goodfellowii 157692 Bacteria Bacteria 379 1.48e-100   NTclustered gi|1708563796|dbj|AP019822.1| 157692 g4090 i0 87.926 5.68929503916449 323 37 84 2 34 355 800919 800598 Leptotrichia goodfellowii JCM16774 DNA, complete genome blastn 2179 379 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
19013353 19013353 PRJNA661142_P_NODE_5675_length_324_cov_7.374545_g5610_i0 PRJNA661142 5675 324 7.374545 23.8935258 Fusobacterium 848 Bacteria Bacteria 451 2.57e-122   NTclustered gi|2705001171|gb|CP077148.1| 851 g5610 i0 94.276 5.50617283950617 297 13 91 4 30 324 2789 3083 Fusobacterium nucleatum strain KCOM2373 plasmid pKCOM2373, complete sequence blastn 1784 455 0.991208791208791 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
22305362 22305362 PRJNA661142_P_NODE_11138_length_176_cov_1.204724_g11073_i0 PRJNA661142 11138 176 1.204724 2.12031424 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 278 2.25e-70   NTclustered gi|922689899|gb|CP012410.1| 712357 g11073 i0 95.402 139.369318181818 174 8 99 0 3 176 53158 52985 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 24529 278 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;