RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA661142", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 16 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 16 ✖

bioproject 1

  • PRJNA661142 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13382168 13382168 PRJNA661142_P_NODE_12351_length_163_cov_0.894737_g12286_i0 PRJNA661142 12351 163 0.894737 1.45842131 Nibricoccus aquaticus 2576891 Bacteria Bacteria 99 1.72e-16   NTclustered gi|1243404978|gb|CP023344.1| 2576891 g12286 i0 78.667 39.9815950920245 150 30 91 2 7 155 74725 74873 Nibricoccus aquaticus strain HZ-65 chromosome, complete genome blastn 6517 99 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus aquaticus
25388119 25388119 PRJNA661142_P_NODE_1760_length_576_cov_50.130930_g1699_i0 PRJNA661142 1760 576 50.13093 288.7541568 Luteolibacter 518753 Bacteria Bacteria 573 9.809999999999998e-159   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g1699 i0 85.923 233.480902777778 547 65 93 8 39 576 2217888 2217345 Luteolibacter sp. LG18 DNA, complete genome blastn 134485 573 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
26796603 26796603 PRJNA661142_P_NODE_12401_length_162_cov_0.902655_g12336_i0 PRJNA661142 12401 162 0.902655 1.4623011 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.2 2.25e-13   NR MCX6902356.1 2026799 g12336 i0 77.4 0.981481481481482 53 12 98.1 0 2 160 177 229 MCX6902356.1 DUF1080 domain-containing protein [Verrucomicrobiota bacterium] diamond 159 73.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26923256 26923256 PRJNA661142_P_NODE_12342_length_163_cov_0.894737_g12277_i0 PRJNA661142 12342 163 0.894737 1.45842131 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 107 7.33e-27   NR HUJ11232.1 2499141 g12277 i0 88.9 1.96932515337423 54 6 99.4 0 163 2 154 207 HUJ11232.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 321 107 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27283298 27283298 PRJNA661142_P_NODE_11343_length_167_cov_0.864407_g11278_i0 PRJNA661142 11343 167 0.864407 1.44355969 Pseudomonadati 3379134 Bacteria Bacteria 65.9 9.2e-11   NR MCX6893336.1 2026799 g11278 i0 67.3 2.96407185628743 55 17 98.8 1 3 167 4 57 MCX6893336.1 aldehyde dehydrogenase EutE [Verrucomicrobiota bacterium] diamond 495 66.2 0.995468277945619 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27283299 27283299 PRJNA661142_P_NODE_11703_length_166_cov_0.871795_g11638_i0 PRJNA661142 11703 166 0.871795 1.4471797 Verrucomicrobiota 74201 Bacteria Bacteria 83.2 7.39e-17   NR MEI7937755.1 2026799 g11638 i0 61.8 9.93975903614458 55 21 99.4 0 2 166 88 142 MEI7937755.1 beta-propeller fold lactonase family protein [Verrucomicrobiota bacterium] diamond 1650 83.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27523752 27523752 PRJNA661142_P_NODE_4463_length_369_cov_1.062500_g4398_i0 PRJNA661142 4463 369 1.0625 3.920625 Candidatus Udaeobacter sp. 2665650 Bacteria Bacteria 41.2 0.0417   NR HXQ40880.1 2665650 g4398 i0 66.7 0.24390243902439 30 10 24.4 0 359 270 1 30 HXQ40880.1 LysR family transcriptional regulator [Candidatus Udaeobacter sp.] diamond 90 41.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Candidatus Udaeobacter Candidatus Udaeobacter sp.
27587018 27587018 PRJNA661142_P_NODE_11424_length_167_cov_0.864407_g11359_i0 PRJNA661142 11424 167 0.864407 1.44355969 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 51.2 1.36e-5   NR MBL9168586.1 2026801 g11359 i0 46.3 0.970059880239521 54 29 97 0 162 1 103 156 MBL9168586.1 RHS repeat-associated core domain-containing protein [Verrucomicrobiales bacterium] diamond 162 51.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28376176 28376176 PRJNA661142_P_NODE_12326_length_163_cov_0.894737_g12261_i0 PRJNA661142 12326 163 0.894737 1.45842131 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.2 2.31e-13   NR MCX6887604.1 2026799 g12261 i0 66.7 1.98773006134969 54 18 99.4 0 162 1 155 208 MCX6887604.1 ATP-binding protein [Verrucomicrobiota bacterium] diamond 324 73.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28957009 28957009 PRJNA661142_P_NODE_12208_length_163_cov_0.894737_g12143_i0 PRJNA661142 12208 163 0.894737 1.45842131 PVC group 1783257 Bacteria Bacteria 82 1.72e-16   NR HUA57236.1 2499141 g12143 i0 80 3.80981595092025 50 10 92 0 158 9 463 512 HUA57236.1 DUF3656 domain-containing protein [Verrucomicrobiia bacterium] diamond 621 82 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29039573 29039573 PRJNA661142_P_NODE_12788_length_161_cov_0.910714_g12723_i0 PRJNA661142 12788 161 0.910714 1.46624954 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 95.5 9.76e-22   NR MSR64416.1 2499141 g12723 i0 76.9 0.968944099378882 52 12 96.9 0 161 6 76 127 MSR64416.1 MBL fold metallo-hydrolase [Verrucomicrobiia bacterium] diamond 156 95.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29355182 29355182 PRJNA661142_P_NODE_11469_length_167_cov_0.864407_g11404_i0 PRJNA661142 11469 167 0.864407 1.44355969 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 72.4 4.59e-13   NR MBN2506407.1 2026799 g11404 i0 66.7 1.76047904191617 48 8 86.2 2 161 18 509 548 MBN2506407.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 294 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30934591 30934591 PRJNA661142_P_NODE_3014_length_453_cov_42.566832_g2951_i0 PRJNA661142 3014 453 42.566832 192.82774896 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 101 1.06e-21   NR PYJ58739.1 2026799 g2951 i0 54.3 0.536423841059603 81 37 53.6 0 40 282 768 848 PYJ58739.1 MAG: hypothetical protein DME24_15085, partial [Verrucomicrobiota bacterium] diamond 243 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31281997 31281997 PRJNA661142_P_NODE_12055_length_164_cov_0.886957_g11990_i0 PRJNA661142 12055 164 0.886957 1.45460948 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 79.3 1.6e-15   NR HEY9175879.1 2499141 g11990 i0 67.9 1.92073170731707 53 17 97 0 162 4 760 812 HEY9175879.1 DUF4965 domain-containing protein [Verrucomicrobiia bacterium] diamond 315 79.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31567010 31567010 PRJNA661142_P_NODE_12356_length_163_cov_0.885965_g12291_i0 PRJNA661142 12356 163 0.885965 1.44412295 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 90.5 1.24e-21   NR MCW5556047.1 2499141 g12291 i0 73.6 0.975460122699387 53 14 97.5 0 3 161 52 104 MCW5556047.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 159 90.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32199560 32199560 PRJNA661142_P_NODE_11778_length_165_cov_0.879310_g11713_i0 PRJNA661142 11778 165 0.87931 1.4508615 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 89.4 2.01e-19   NR HPC59806.1 2026799 g11713 i0 81.5 1.96363636363636 54 10 98.2 0 2 163 76 129 HPC59806.1 dipeptide epimerase [Verrucomicrobiota bacterium] diamond 324 89.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;