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contig_metadata

6 rows where bioproject = "PRJNA661142", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA661142 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628102 628102 PRJNA661142_P_NODE_11161_length_175_cov_1.039683_g11096_i0 PRJNA661142 11161 175 1.039683 1.81944525 Caenorhabditis elegans 6239 Nematoda Nematoda 281 1.73e-71   NTclustered gi|1972305279|ref|NM_001392751.1| 6239 g11096 i0 100 2.91428571428571 152 0 87 0 2 153 152 1 Caenorhabditis elegans UPF0057 membrane protein F47B7.1 (pmpl-1), mRNA blastn 510 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3178993 3178993 PRJNA661142_P_NODE_12123_length_164_cov_0.886957_g12058_i0 PRJNA661142 12123 164 0.886957 1.45460948 Caenorhabditis elegans 6239 Nematoda Nematoda 257 2.7e-64   NTclustered gi|1972311474|ref|NM_001029430.4| 6239 g12058 i0 99.296 3.80487804878049 142 1 87 0 23 164 1 142 Caenorhabditis elegans Neuropeptide-Like Protein (F23D12.7), mRNA blastn 624 257 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
5731553 5731553 PRJNA661142_P_NODE_12785_length_161_cov_0.910714_g12720_i0 PRJNA661142 12785 161 0.910714 1.46624954 Caenorhabditis elegans 6239 Nematoda Nematoda 250 4.42e-62   NTclustered gi|1972225930|ref|NM_058275.7| 6239 g12720 i0 99.275 3.5776397515528 138 1 86 0 23 160 1 138 Caenorhabditis elegans Large ribosomal subunit protein uL30 (rpl-7), mRNA blastn 576 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10832254 10832254 PRJNA661142_P_NODE_12849_length_153_cov_2.336538_g12784_i0 PRJNA661142 12849 153 2.336538 3.57490314 Caenorhabditis elegans 6239 Nematoda Nematoda 244 1.93e-60   NTclustered gi|687866020|emb|LK927829.1| 6239 g12784 i0 100 45.7712418300654 132 0 86 0 2 133 60146 60015 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000261 blastn 7003 244 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17206125 17206125 PRJNA661142_P_NODE_11594_length_166_cov_0.871795_g11529_i0 PRJNA661142 11594 166 0.871795 1.4471797 Caenorhabditis elegans 6239 Nematoda Nematoda 270 3.5299999999999998e-68   NTclustered gi|687865429|emb|LK927562.1| 6239 g11529 i0 100 3.5 146 0 88 0 21 166 239952 239807 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000030 blastn 581 270 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
21030631 21030631 PRJNA661142_P_NODE_11337_length_167_cov_0.864407_g11272_i0 PRJNA661142 11337 167 0.864407 1.44355969 Caenorhabditis elegans 6239 Nematoda Nematoda 268 1.28e-67   NTclustered gi|1972254356|ref|NM_063878.6| 6239 g11272 i0 100 2.91017964071856 145 0 87 0 23 167 1 145 Caenorhabditis elegans Deoxyhypusine hydroxylase (dohh-1), mRNA blastn 486 268 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;