RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA661142", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA661142 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15930998 15930998 PRJNA661142_P_NODE_4193_length_381_cov_7.195783_g4128_i0 PRJNA661142 4193 381 7.195783 27.41593323 Bradybaena similaris 145626 Mollusca Mollusca 93.5 2.14e-14   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g4128 i0 87.5 98.3517060367454 80 10 21 0 111 190 34999832 34999753 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 37472 93.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
30902945 30902945 PRJNA661142_P_NODE_3714_length_407_cov_25.340782_g3650_i0 PRJNA661142 3714 407 25.340782 103.13698274 Saccostrea cuccullata 36930 Mollusca Mollusca 46.6 0.00818   NR XP_062599881.1 36930 g3650 i0 32.2 0.434889434889435 59 40 43.5 0 208 384 21 79 XP_062599881.1 uncharacterized protein LOC134261454 [Saccostrea cuccullata] diamond 177 46.6 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata
31218449 31218449 PRJNA661142_P_NODE_3795_length_402_cov_12.342776_g3731_i0 PRJNA661142 3795 402 12.342776 49.61795952 Pinctada imbricata 66713 Mollusca Mollusca 68.2 8.03e-11   NR KAK3108137.1 66713 g3731 i0 38.2 1.51492537313433 102 52 71.6 2 98 385 14 110 KAK3108137.1 hypothetical protein FSP39_001849 [Pinctada imbricata] diamond 609 68.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pterioida Pteriidae Pinctada Pinctada imbricata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;