RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA661142" and tax_clade = "Cyanobacteriota/Melainabacteria group"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 4 ✖

bioproject 1

  • PRJNA661142 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3713422 3713422 PRJNA661142_P_NODE_2783_length_473_cov_4.551887_g2720_i0 PRJNA661142 2783 473 4.551887 21.53042551 Chroococcidiopsis 54298 Bacteria Bacteria 813 0   NTclustered gi|146740648|emb|AM709635.1| 171389 g2720 i0 99.552 155.668076109937 446 2 94 0 28 473 2783 3228 Chroococcidiopsis sp. SAG 2025 partial ribosomal RNA operon, strain SAG 2025 blastn 73631 819 0.992673992673993 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis sp. SAG 2025
22305456 22305456 PRJNA661142_P_NODE_9238_length_235_cov_1.897849_g9173_i0 PRJNA661142 9238 235 1.897849 4.45994515 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 435 1.79e-117   NTclustered gi|225696252|gb|FJ805919.1| 259957 g9173 i0 100 145.859574468085 235 0 100 0 1 235 3257 3491 Uncultured Chroococcidiopsis sp. clone A1_5 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 34277 435 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
27176012 27176012 PRJNA661142_P_NODE_5842_length_319_cov_2.644444_g5777_i0 PRJNA661142 5842 319 2.644444 8.43577636 Cyanobacteria bacterium UBA8553 2055771 Bacteria Bacteria 121 1.3399999999999998e-31   NR HAA29960.1 2055771 g5777 i0 56.6 2.99059561128527 106 46 99.7 0 319 2 109 214 HAA29960.1 Crp/Fnr family transcriptional regulator [Cyanobacteria bacterium UBA8553] diamond 954 121 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         Cyanobacteria bacterium UBA8553
28944885 28944885 PRJNA661142_P_NODE_4628_length_362_cov_2.932907_g4563_i0 PRJNA661142 4628 362 2.932907 10.61712334 Leptodesmis sichuanensis 2906798 Bacteria Bacteria 122 5.14e-33   NR WP_233744794.1 2906798 g4563 i0 86.9 0.505524861878453 61 8 50.6 0 211 29 1 61 WP_233744794.1 DUF3598 family protein [Leptodesmis sichuanensis] diamond 183 122 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptodesmis Leptodesmis sichuanensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;