RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA661142" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA661142 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
628133 628133 PRJNA661142_P_NODE_3041_length_451_cov_75.176617_g2978_i0 PRJNA661142 3041 451 75.176617 339.04654267 Cochliopodium minus 313997 Discosea other_Eukaryota 577 5.83e-160   NTclustered gi|330902862|gb|JF298257.1| 313997 g2978 i0 91.784 50.1640798226164 426 18 92 11 1 415 612 193 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 22624 577 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
5731625 5731625 PRJNA661142_P_NODE_7985_length_266_cov_2.387097_g7920_i0 PRJNA661142 7985 266 2.387097 6.34967802 Cochliopodium minus 313997 Discosea other_Eukaryota 357 4.6e-94   NTclustered gi|330902862|gb|JF298257.1| 313997 g7920 i0 93.469 61.0601503759398 245 8 89 4 1 238 2087 1844 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 16242 357 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
21030675 21030675 PRJNA661142_P_NODE_4497_length_367_cov_6.522013_g4432_i0 PRJNA661142 4497 367 6.522013 23.93578771 Acytostelium leptosomum 133408 Evosea other_Eukaryota 503 8.009999999999998e-138   NTclustered gi|1057487862|gb|KX539491.1| 133408 g4432 i0 94.225 3.2016348773842 329 19 90 0 39 367 2489 2161 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 1175 503 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;