RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA658591", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA658591 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
625468 625468 PRJNA658591_S_NODE_1241_length_367_cov_134.295597_g1178_i0 PRJNA658591 1241 367 134.295597 492.86484099 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 9.62e-8   NTclustered gi|2565353280|emb|OY626164.1| 2697049 g1178 i0 89.655 0.517711171662125 58 3 15 3 28 82 26558 26501 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 190 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5728916 5728916 PRJNA658591_S_NODE_1445_length_342_cov_44.262799_g1382_i0 PRJNA658591 1445 342 44.262799 151.37877258 Betacoronavirus pandemicum 3418604 Viruses Viruses 119 3.14e-22   NTclustered gi|2165835426|emb|OV196492.1| 2697049 g1382 i0 94.872 6.5672514619883 78 1 22 2 1 75 61 138 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 2246 119 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21028021 21028021 PRJNA658591_S_NODE_297_length_660_cov_210.075286_g158_i1 PRJNA658591 297 660 210.075286 1386.4968876 Betacoronavirus pandemicum 3418604 Viruses Viruses 115 8.26e-21   NTclustered gi|2165836832|emb|OV197136.1| 2697049 g158 i1 94.737 0.284848484848485 76 1 11 2 1 73 41 116 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 188 115 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;