RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA658591", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA658591 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7004085 7004085 PRJNA658591_S_NODE_326_length_642_cov_3.755481_g271_i0 PRJNA658591 326 642 3.755481 24.11018802 Myxococcaceae bacterium 2484252 Bacteria Bacteria 354 1.7299999999999993e-119   NR RYZ13579.1 2484252 g271 i0 83.6 0.995327102803738 213 35 99.5 0 3 641 69 281 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 639 354 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
9554053 9554053 PRJNA658591_S_NODE_8988_length_168_cov_1.310924_g8925_i0 PRJNA658591 8988 168 1.310924 2.20235232 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 97.8 1.65e-22   NR MBI1910303.1 2026735 g8925 i0 81.5 0.964285714285714 54 10 96.4 0 163 2 167 220 MBI1910303.1 elongation factor Tu [Deltaproteobacteria bacterium] diamond 162 97.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27523718 27523718 PRJNA658591_S_NODE_6383_length_189_cov_3.185714_g6320_i0 PRJNA658591 6383 189 3.185714 6.02099946 Myxococcaceae bacterium 2484252 Bacteria Bacteria 119 3.36e-30   NR RYZ13579.1 2484252 g6320 i0 91.9 0.984126984126984 62 5 98.4 0 187 2 277 338 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 186 119 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28944860 28944860 PRJNA658591_S_NODE_10348_length_162_cov_0.920354_g10285_i0 PRJNA658591 10348 162 0.920354 1.49097348 Archangium sp. 1872627 Bacteria Bacteria 41.6 0.0317   NR WP_407755685.1 1872627 g10285 i0 47.6 0.777777777777778 42 16 68.5 2 27 137 9 49 WP_407755685.1 DUF6311 domain-containing protein [Archangium sp.] diamond 126 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;