RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA658591", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA658591 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26923220 26923220 PRJNA658591_S_NODE_8642_length_170_cov_1.289256_g8579_i0 PRJNA658591 8642 170 1.289256 2.1917352 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 82.8 1.05e-16   NR MBY0516343.1 2081706 g8579 i0 71.4 4.94117647058824 56 14 98.8 1 169 2 763 816 MBY0516343.1 FAD-dependent oxidoreductase [Bacteriovoracaceae bacterium] diamond 840 82.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28376149 28376149 PRJNA658591_S_NODE_1886_length_305_cov_3.128906_g1823_i0 PRJNA658591 1886 305 3.128906 9.5431633 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 179 5.699999999999999e-55   NR MBX9767865.1 2053517 g1823 i0 89.1 0.99344262295082 101 11 99.3 0 303 1 42 142 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 303 179 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29986599 29986599 PRJNA658591_S_NODE_5491_length_200_cov_3.761589_g5428_i0 PRJNA658591 5491 200 3.761589 7.523178 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 105 2.2999999999999994e-24   NR MCO4754917.1 2081706 g5428 i0 77.3 7.665 66 15 99 0 199 2 110 175 MCO4754917.1 NADP-dependent isocitrate dehydrogenase [Bacteriovoracaceae bacterium] diamond 1533 105 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;