RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA658591", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA658591 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1901664 1901664 PRJNA658591_S_NODE_702_length_458_cov_162.511002_g640_i0 PRJNA658591 702 458 162.511002 744.30038916 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 67.6 1.59e-6   NTclustered gi|687530181|emb|LK655158.1| 57078 g640 i0 100 0.139737991266376 36 0 8 0 420 455 819 854 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0236877 blastn 64 67.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
14654414 14654414 PRJNA658591_S_NODE_11412_length_153_cov_2.355769_g11349_i0 PRJNA658591 11412 153 2.355769 3.60432657 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.013   NTclustered gi|687403561|emb|LK722096.1| 57078 g11349 i0 100 0.183006535947712 28 0 18 0 115 142 150 123 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0296061 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
28471095 28471095 PRJNA658591_S_NODE_7326_length_180_cov_2.603053_g7263_i0 PRJNA658591 7326 180 2.603053 4.6854954 Dibothriocephalus latus 60516 Platyhelminthes Platyhelminthes 41.2 0.0269   NR VDK35067.1 60516 g7263 i0 50 0.5 30 14 50 1 10 99 34 62 VDK35067.1 unnamed protein product [Dibothriocephalus latus] diamond 90 41.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Dibothriocephalus Dibothriocephalus latus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;