RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA658591", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA658591 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12104863 12104863 PRJNA658591_S_NODE_8110_length_174_cov_1.248000_g8047_i0 PRJNA658591 8110 174 1.248 2.17152 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 137 3.93e-28   NTclustered gi|829175019|ref|XM_001017812.3| 312017 g8047 i0 87.402 0.729885057471264 127 6 72 4 24 149 267 150 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 127 137 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
19012944 19012944 PRJNA658591_S_NODE_4155_length_222_cov_3.225434_g4092_i0 PRJNA658591 4155 222 3.225434 7.16046348 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 111 3.2e-20   NTclustered gi|3366652|gb|AF031320.1|AF031320 5911 g4092 i0 89.655 0.783783783783784 87 9 39 0 133 219 1105 1019 Tetrahymena thermophila granule lattice protein 4 precursor (GRL4) mRNA, complete cds blastn 174 111 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
28376151 28376151 PRJNA658591_S_NODE_3846_length_229_cov_1.155556_g3783_i0 PRJNA658591 3846 229 1.155556 2.64622324 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 50.8 4.24e-5   NR XP_001022599.2 312017 g3783 i0 80 0.393013100436681 30 6 39.3 0 107 196 348 377 XP_001022599.2 granule lattice protein [Tetrahymena thermophila SB210] diamond 90 50.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31357666 31357666 PRJNA658591_S_NODE_8976_length_168_cov_1.394958_g8913_i0 PRJNA658591 8976 168 1.394958 2.34352944 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 85.9 4.6e-18   NR KAL4480407.1 5901 g8913 i0 73.2 3 56 15 100 0 168 1 156 211 KAL4480407.1 hypothetical protein ABPG74_020923 [Tetrahymena malaccensis] diamond 504 86.7 0.990772779700115 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
31472027 31472027 PRJNA658591_S_NODE_9876_length_164_cov_0.904348_g9813_i0 PRJNA658591 9876 164 0.904348 1.48313072 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 85.9 7.97e-18   NR XP_001011873.1 312017 g9813 i0 60.7 1.11585365853659 61 17 98.8 2 162 1 675 735 XP_001011873.1 hypothetical protein TTHERM_00392970 [Tetrahymena thermophila SB210] diamond 183 85.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31768681 31768681 PRJNA658591_S_NODE_6237_length_191_cov_1.345070_g6174_i0 PRJNA658591 6237 191 1.34507 2.5690837 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0098   NR KAL4464683.1 5901 g6174 i0 78.3 0.706806282722513 23 5 36.1 0 115 183 304 326 KAL4464683.1 hypothetical protein ABPG74_011244 [Tetrahymena malaccensis] diamond 135 43.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;