RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA658591" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 9 ✖

bioproject 1

  • PRJNA658591 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4453403 4453403 PRJNA658591_S_NODE_9444_length_166_cov_0.888889_g9381_i0 PRJNA658591 9444 166 0.888889 1.47555574 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 215 1.68e-51   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g9381 i0 90 279.114457831325 170 11 100 6 1 166 7052303 7052470 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 46333 215 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
12640592 12640592 PRJNA658591_S_NODE_10310_length_162_cov_1.079646_g10247_i0 PRJNA658591 10310 162 1.079646 1.74902652 Singulisphaera 466152 Bacteria Bacteria 250 4.45e-62   NTclustered gi|485099129|ref|NR_102524.1| 466153 g10247 i0 94.444 173.246913580247 162 9 100 0 1 162 1593 1754 Singulisphaera acidiphila strain MOB10 23S ribosomal RNA gene, complete sequence blastn 28066 250 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila
27460735 27460735 PRJNA658591_S_NODE_2163_length_288_cov_1.761506_g2100_i0 PRJNA658591 2163 288 1.761506 5.07313728 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.7 0.0463   NR NOX57076.1 2026780 g2100 i0 40 0.46875 45 27 46.9 0 238 104 143 187 NOX57076.1 hypothetical protein [Planctomycetota bacterium] diamond 135 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29146588 29146588 PRJNA658591_S_NODE_10329_length_162_cov_0.920354_g10266_i0 PRJNA658591 10329 162 0.920354 1.49097348 Bacteria 2 Bacteria Bacteria 61.6 6.39e-11   NR GBL24036.1 2026771 g10266 i0 59.6 7.55555555555556 47 19 87 0 2 142 18 64 GBL24036.1 secretory immunoglobulin A-binding protein EsiB [Opitutia bacterium] diamond 1224 61.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
29291846 29291846 PRJNA658591_S_NODE_8849_length_169_cov_0.866667_g8786_i0 PRJNA658591 8849 169 0.866667 1.46466723 Phycisphaerales bacterium 2052180 Bacteria Bacteria 42.7 0.0141   NR UCG46482.1 2052180 g8786 i0 45.1 0.905325443786982 51 23 90.5 2 157 5 99 144 UCG46482.1 MAG: hypothetical protein JSU94_13365, partial [Phycisphaerales bacterium] diamond 153 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
30144204 30144204 PRJNA658591_S_NODE_11252_length_154_cov_3.504762_g11189_i0 PRJNA658591 11252 154 3.504762 5.39733348 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 67.8 5.22e-13   NR RYD73501.1 2026800 g11189 i0 78.6 0.818181818181818 42 9 81.8 0 128 3 3 44 RYD73501.1 MAG: fructose-bisphosphate aldolase class I [Verrucomicrobiaceae bacterium] diamond 126 67.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30902916 30902916 PRJNA658591_S_NODE_1994_length_298_cov_2.927711_g1931_i0 PRJNA658591 1994 298 2.927711 8.72457878 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 144 1.07e-39   NR RYD65414.1 2026800 g1931 i0 82 0.895973154362416 89 16 89.6 0 294 28 73 161 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 267 144 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31218430 31218430 PRJNA658591_S_NODE_3755_length_231_cov_1.510989_g3692_i0 PRJNA658591 3755 231 1.510989 3.49038459 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 98.2 2.0900000000000002e-22   NR RYD65414.1 2026800 g3692 i0 64.5 0.987012987012987 76 27 98.7 0 229 2 177 252 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 228 98.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31693220 31693220 PRJNA658591_S_NODE_57_length_1122_cov_5.536813_g42_i0 PRJNA658591 57 1122 5.536813 62.12304186 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 251 5.65e-77   NR RYD71398.1 2026800 g42 i0 45.7 0.802139037433155 300 150 78.6 6 9 890 69 361 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 900 251 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;