RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA658591", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA658591 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26954635 26954635 PRJNA658591_S_NODE_7002_length_183_cov_1.597015_g6939_i0 PRJNA658591 7002 183 1.597015 2.92253745 Gorgonomyces haynaldii 382530 Fungi Fungi 81.6 8.5e-18   NR KAI8911690.1 382530 g6939 i0 62.7 1.9672131147541 59 22 96.7 0 7 183 26 84 KAI8911690.1 NAC domain-containing protein [Gorgonomyces haynaldii] diamond 360 81.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Gorgonomycetaceae Gorgonomyces Gorgonomyces haynaldii
29134219 29134219 PRJNA658591_S_NODE_9049_length_168_cov_0.873950_g8986_i0 PRJNA658591 9049 168 0.87395 1.468236 Irineochytrium annulatum 109884 Fungi Fungi 79 2.28e-15   NR KAJ3192026.1 109884 g8986 i0 63 2.92857142857143 54 20 96.4 0 167 6 243 296 KAJ3192026.1 Insulinase (Peptidase M16) [Irineochytrium annulatum] diamond 492 79 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Irineochytrium Irineochytrium annulatum
30219894 30219894 PRJNA658591_S_NODE_8092_length_174_cov_1.640000_g8029_i0 PRJNA658591 8092 174 1.64 2.8536 Boothiomyces 451452 Fungi Fungi 54.7 7.08e-7   NR KAJ3259685.1 261099 g8029 i0 56.8 2.27586206896552 44 19 75.9 0 169 38 94 137 KAJ3259685.1 Protein tyrosine phosphatase type IVA 1 [Boothiomyces macroporosus] diamond 396 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Terramycetaceae Boothiomyces Boothiomyces macroporosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;