RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA658591" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA658591 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26669575 26669575 PRJNA658591_S_NODE_7721_length_177_cov_1.632812_g7658_i0 PRJNA658591 7721 177 1.632812 2.89007724 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 87 2.11e-18   NR KOO28580.1 1460289 g7658 i0 68.4 3.94915254237288 57 18 96.6 0 3 173 288 344 KOO28580.1 DNA-directed RNA polymerases i and iii subunit rpac1 [Chrysochromulina tobinii] diamond 699 87 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
29071062 29071062 PRJNA658591_S_NODE_9048_length_168_cov_0.873950_g8985_i0 PRJNA658591 9048 168 0.87395 1.468236 Prymnesium parvum 97485 Haptophyta other_Eukaryota 66.2 3.42e-11   NR KAL1515805.1 97485 g8985 i0 63 2.32142857142857 46 15 82.1 1 166 29 165 208 KAL1515805.1 hypothetical protein AB1Y20_002421 [Prymnesium parvum] diamond 390 66.2 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31061079 31061079 PRJNA658591_S_NODE_9355_length_166_cov_2.222222_g9292_i0 PRJNA658591 9355 166 2.222222 3.68888852 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 101 3.22e-23   NR KAG8468248.1 2081491 g9292 i0 87.3 2.98192771084337 55 7 99.4 0 165 1 451 505 KAG8468248.1 hypothetical protein KFE25_013331 [Diacronema lutheri] diamond 495 101 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
31408670 31408670 PRJNA658591_S_NODE_9436_length_166_cov_0.888889_g9373_i0 PRJNA658591 9436 166 0.888889 1.47555574 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 67 1.43e-11   NR KOO31350.1 1460289 g9373 i0 54.5 0.993975903614458 55 25 99.4 0 166 2 158 212 KOO31350.1 proteasome endopeptidase complex beta subunit [Chrysochromulina tobinii] diamond 165 67 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;