RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA658591" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA658591 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7004080 7004080 PRJNA658591_S_NODE_2166_length_288_cov_1.481172_g2103_i0 PRJNA658591 2166 288 1.481172 4.26577536 Patescibacteria group bacterium 2052139 Bacteria Bacteria 171 1.42e-49   NR MCL4419852.1 2052139 g2103 i0 87.4 0.989583333333333 95 12 99 0 287 3 93 187 MCL4419852.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Patescibacteria group bacterium] diamond 285 171 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
29986594 29986594 PRJNA658591_S_NODE_1191_length_375_cov_2.325153_g1128_i0 PRJNA658591 1191 375 2.325153 8.71932375 Patescibacteria group bacterium 2052139 Bacteria Bacteria 195 1.79e-58   NR MCL4419852.1 2052139 g1128 i0 75.6 0.984 123 30 98.4 0 3 371 195 317 MCL4419852.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Patescibacteria group bacterium] diamond 369 195 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32421016 32421016 PRJNA658591_S_NODE_9239_length_167_cov_0.881356_g9176_i0 PRJNA658591 9239 167 0.881356 1.47186452 Candidatus Hydrothermia bacterium 3014280 Bacteria Bacteria 60.5 7.34e-9   NR HOL24546.1 3014280 g9176 i0 50.9 0.952095808383233 53 26 95.2 0 8 166 28 80 HOL24546.1 tetratricopeptide repeat protein [Candidatus Hydrothermia bacterium] diamond 159 60.5 1 Bacteria Bacteria candidate phyla   Candidatus Hydrothermota Candidatus Hydrothermia       Candidatus Hydrothermia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;