RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA658591", tax_clade = "Amoebozoa" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA658591 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27997488 27997488 PRJNA658591_S_NODE_1125_length_383_cov_6.751497_g1062_i0 PRJNA658591 1125 383 6.751497 25.85823351 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 125 1.95e-34   NR KAH3756789.1 1580589 g1062 i0 71.3 3.24281984334204 101 29 79.1 0 53 355 4 104 KAH3756789.1 ribosomal protein L35 [Pelomyxa schiedti] diamond 1242 125 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29986600 29986600 PRJNA658591_S_NODE_6411_length_189_cov_1.778571_g6348_i0 PRJNA658591 6411 189 1.778571 3.36149919 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 101 1.5699999999999994e-23   NR XP_004358271.1 1257118 g6348 i0 79.3 2.79365079365079 58 12 92.1 0 176 3 326 383 XP_004358271.1 fumarylacetoacetase [Acanthamoeba castellanii str. Neff] diamond 528 101 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;