RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA657860" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA657860 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30251737 30251737 PRJNA657860_P_NODE_1592_length_254_cov_1.520737_g1536_i0 PRJNA657860 1592 254 1.520737 3.86267198 Pseudomonadati 3379134 Bacteria Bacteria 62.4 2.91e-10   NR GAA9176272.1 210 g1536 i0 96.3 0.956692913385827 27 1 31.9 0 5 85 1 27 GAA9176272.1 hypothetical protein Kyoto193A_0470 [Helicobacter pylori] diamond 243 62.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30303002 30303002 PRJNA657860_P_NODE_2092_length_210_cov_1.323699_g2036_i0 PRJNA657860 2092 210 1.323699 2.7797679 Helicobacter pylori 210 Bacteria Bacteria 56.6 5.65e-9   NR GAA6859173.1 210 g2036 i0 100 0.685714285714286 24 0 34.3 0 2 73 16 39 GAA6859173.1 hypothetical protein Kyoto206A_0790 [Helicobacter pylori] diamond 144 56.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;