contig_metadata
13 rows where bioproject = "PRJNA657860" and tax_phylum = "Bacillota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 625427 | 625427 | PRJNA657860_P_NODE_1741_length_239_cov_1.460396_g1685_i0 | PRJNA657860 | 1741 | 239 | 1.460396 | 3.49034644 | Ezakiella coagulans | 46507 | Bacteria | Bacteria | 431 | 2.3599999999999996e-116 | NTclustered | gi|2238283248|gb|CP096650.1| | 46507 | g1685 | i0 | 99.163 | 369.585774058577 | 239 | 2 | 100 | 0 | 1 | 239 | 158431 | 158669 | Ezakiella coagulans strain C0061C1 chromosome, complete genome | blastn | 88331 | 431 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Ezakiella | Ezakiella coagulans | ||||
| 4989691 | 4989691 | PRJNA657860_P_NODE_2044_length_213_cov_1.829545_g1988_i0 | PRJNA657860 | 2044 | 213 | 1.829545 | 3.89693085 | root | 1 | Root_unresolved | Root_unresolved | 388 | 1.26e-103 | NTclustered | gi|2264785169|dbj|LC717921.1| | 46507 | g1988 | i0 | 99.531 | 100 | 213 | 1 | 100 | 0 | 1 | 213 | 46 | 258 | Ezakiella coagulans JCM:35485 gene for 16S rRNA, partial sequence | blastn | 21300 | 388 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Ezakiella | Ezakiella coagulans | ||||
| 7004043 | 7004043 | PRJNA657860_P_NODE_2306_length_198_cov_1.440994_g2250_i0 | PRJNA657860 | 2306 | 198 | 1.440994 | 2.85316812 | Veillonella rogosae | 423477 | Bacteria | Bacteria | 278 | 2.6e-70 | NTclustered | gi|2326448795|gb|CP110418.1| | 423477 | g2250 | i0 | 91.919 | 386.954545454545 | 198 | 16 | 100 | 0 | 1 | 198 | 97740 | 97543 | Veillonella rogosae strain KCOM 3468 chromosome, complete genome | blastn | 76617 | 278 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Veillonellales | Veillonellaceae | Veillonella | Veillonella rogosae | ||
| 10090007 | 10090007 | PRJNA657860_P_NODE_1928_length_223_cov_1.639785_g1872_i0 | PRJNA657860 | 1928 | 223 | 1.639785 | 3.65672055 | root | 1 | Root_unresolved | Root_unresolved | 412 | 7.88e-111 | NTclustered | gi|1796972337|gb|CP033085.1| | 1280 | g1872 | i0 | 100 | 59.6681614349776 | 223 | 0 | 100 | 0 | 1 | 223 | 2681340 | 2681118 | Staphylococcus aureus strain WH3018 chromosome | blastn | 13306 | 412 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 10090008 | 10090008 | PRJNA657860_P_NODE_2188_length_205_cov_1.333333_g2132_i0 | PRJNA657860 | 2188 | 205 | 1.333333 | 2.73333265 | Lachnospirales | 3085636 | Bacteria | Bacteria | 255 | 1.27e-63 | NTclustered | gi|2127621832|gb|CP085930.1| | 411474 | g2132 | i0 | 89.423 | 483.453658536585 | 208 | 15 | 100 | 6 | 1 | 205 | 1969978 | 1969775 | Coprococcus eutactus ATCC 27759 strain FDAARGOS_1581 chromosome, complete genome | blastn | 99108 | 257 | 0.992217898832685 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Coprococcus | Coprococcus eutactus | ||
| 10090009 | 10090009 | PRJNA657860_P_NODE_2868_length_175_cov_1.144928_g2812_i0 | PRJNA657860 | 2868 | 175 | 1.144928 | 2.003624 | Finegoldia | 150022 | Bacteria | Bacteria | 305 | 1.02e-78 | NTclustered | gi|2127562652|gb|CP085955.1| | 1260 | g2812 | i0 | 98.276 | 117.6 | 174 | 3 | 99 | 0 | 2 | 175 | 873431 | 873604 | Finegoldia magna strain FDAARGOS_1557 chromosome, complete genome | blastn | 20580 | 305 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Finegoldia | Finegoldia magna | ||
| 13915405 | 13915405 | PRJNA657860_P_NODE_731_length_391_cov_8.257062_g675_i0 | PRJNA657860 | 731 | 391 | 8.257062 | 32.28511242 | Bacillales | 1385 | Bacteria | Bacteria | 529 | 1.4199999999999994e-145 | NTclustered | gi|2717532442|gb|CP121242.2| | 1280 | g675 | i0 | 91.26 | 648.414322250639 | 389 | 32 | 100 | 2 | 4 | 391 | 480305 | 479918 | Staphylococcus aureus strain ID029 chromosome, complete genome | blastn | 253530 | 534 | 0.99063670411985 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 16464221 | 16464221 | PRJNA657860_P_NODE_713_length_397_cov_3.186111_g657_i0 | PRJNA657860 | 713 | 397 | 3.186111 | 12.64886067 | Lactobacillus | 1578 | Bacteria | Bacteria | 728 | 0 | NTclustered | gi|2913931147|gb|CP181267.1| | 1584 | g657 | i0 | 99.748 | 542.395465994962 | 397 | 1 | 100 | 0 | 1 | 397 | 525202 | 524806 | MAG: Lactobacillus delbrueckii isolate UW_FK_LACTO1_1 chromosome | blastn | 215331 | 734 | 0.991825613079019 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Lactobacillus delbrueckii | ||
| 20287729 | 20287729 | PRJNA657860_P_NODE_2256_length_200_cov_5.815951_g2200_i0 | PRJNA657860 | 2256 | 200 | 5.815951 | 11.631902 | Staphylococcus | 1279 | Bacteria | Bacteria | 355 | 1.18e-93 | NTclustered | gi|1848626851|gb|CP054017.1| | 1292 | g2200 | i0 | 98.99 | 99 | 198 | 2 | 99 | 0 | 3 | 200 | 2095143 | 2094946 | Staphylococcus warneri strain FDAARGOS_754 chromosome, complete genome | blastn | 19800 | 355 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus warneri | ||
| 21563365 | 21563365 | PRJNA657860_P_NODE_777_length_377_cov_7.052941_g721_i0 | PRJNA657860 | 777 | 377 | 7.052941 | 26.58958757 | Bacillati | 1783272 | Bacteria | Bacteria | 697 | 0 | NTclustered | gi|2784030803|gb|CP163515.1| | 1601 | g721 | i0 | 100 | 602.018567639257 | 377 | 0 | 100 | 0 | 1 | 377 | 1653342 | 1653718 | Ligilactobacillus agilis strain W70 chromosome, complete genome | blastn | 226961 | 697 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Ligilactobacillus | Ligilactobacillus agilis | ||
| 22302743 | 22302743 | PRJNA657860_P_NODE_3818_length_150_cov_1.017699_g3762_i0 | PRJNA657860 | 3818 | 150 | 1.017699 | 1.5265485 | Staphylococcus epidermidis | 1282 | Bacteria | Bacteria | 272 | 8.609999999999998e-69 | NTclustered | gi|1176884116|gb|CP020463.1| | 1282 | g3762 | i0 | 99.333 | 100 | 150 | 1 | 100 | 0 | 1 | 150 | 283657 | 283806 | Staphylococcus epidermidis strain 1457 chromosome, complete genome | blastn | 15000 | 272 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 23578110 | 23578110 | PRJNA657860_P_NODE_3719_length_152_cov_1.321739_g3663_i0 | PRJNA657860 | 3719 | 152 | 1.321739 | 2.00904328 | Anaerococcus nagyae | 1755241 | Bacteria | Bacteria | 281 | 1.46e-71 | NTclustered | gi|2722731751|dbj|AP031484.1| | 1755241 | g3663 | i0 | 100 | 1 | 152 | 0 | 100 | 0 | 1 | 152 | 1513301 | 1513452 | Anaerococcus nagyae NBRC 113824 DNA, complete genome: sequence1 | blastn | 152 | 281 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Anaerococcus | Anaerococcus nagyae | ||
| 24851705 | 24851705 | PRJNA657860_P_NODE_3340_length_161_cov_1.516129_g3284_i0 | PRJNA657860 | 3340 | 161 | 1.516129 | 2.44096769 | Weissella cibaria | 137591 | Bacteria | Bacteria | 292 | 7.24e-75 | NTclustered | gi|2804422573|gb|CP169283.1| | 137591 | g3284 | i0 | 99.379 | 518.950310559006 | 161 | 1 | 100 | 0 | 1 | 161 | 741344 | 741504 | Weissella cibaria strain ZJU.1 chromosome, complete genome | blastn | 83551 | 292 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Weissella cibaria |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;