RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA657860", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA657860 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24851702 24851702 PRJNA657860_P_NODE_2940_length_172_cov_1.148148_g2884_i0 PRJNA657860 2940 172 1.148148 1.97481456 Ditylenchus destructor 166010 Nematoda Nematoda 103 1.18e-27   NR KAI1722231.1 166010 g2884 i0 92.9 0.976744186046512 56 4 97.7 0 3 170 7 62 KAI1722231.1 ribosomal l38e protein family domain-containing protein [Ditylenchus destructor] diamond 168 103 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
27207579 27207579 PRJNA657860_P_NODE_1662_length_246_cov_2.583732_g1606_i0 PRJNA657860 1662 246 2.583732 6.35598072 Steinernema carpocapsae 34508 Nematoda Nematoda 71.2 7.61e-13   NR TKR72964.1 34508 g1606 i0 55.6 0.658536585365854 54 23 64.6 1 183 25 5 58 TKR72964.1 hypothetical protein L596_020342 [Steinernema carpocapsae] diamond 162 71.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;