RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA657860", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA657860 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3176317 3176317 PRJNA657860_P_NODE_2823_length_176_cov_3.892086_g2767_i0 PRJNA657860 2823 176 3.892086 6.85007136 Paludisphaera borealis 1387353 Bacteria Bacteria 287 3.74e-73   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g2767 i0 96.023 222.5 176 7 100 0 1 176 121214 121039 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 39160 287 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
5728882 5728882 PRJNA657860_P_NODE_185_length_881_cov_2.778436_g147_i0 PRJNA657860 185 881 2.778436 24.47802116 Tautonia plasticadhaerens 2527974 Bacteria Bacteria 1114 0   NTclustered gi|1712713678|gb|CP036426.1| 2527974 g147 i0 89.593 554.068104426788 884 83 100 8 1 881 265716 266593 Tautonia plasticadhaerens strain ElP chromosome blastn 488134 1114 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Tautonia Tautonia plasticadhaerens
12104786 12104786 PRJNA657860_P_NODE_1590_length_255_cov_1.174312_g1534_i0 PRJNA657860 1590 255 1.174312 2.9944956 Tautonia plasticadhaerens 2527974 Bacteria Bacteria 337 5.709999999999998e-88   NTclustered gi|1712713678|gb|CP036426.1| 2527974 g1534 i0 90.625 79.9450980392157 256 20 99 3 2 255 266187 265934 Tautonia plasticadhaerens strain ElP chromosome blastn 20386 337 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Tautonia Tautonia plasticadhaerens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;