RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA657860", tax_clade = "Opisthokonta" and tax_phylum = "Ascomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 11 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 11 ✖

bioproject 1

  • PRJNA657860 · 11 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1161363 1161363 PRJNA657860_P_NODE_1241_length_297_cov_3.680769_g1185_i0 PRJNA657860 1241 297 3.680769 10.93188393 Ascomycota 4890 Fungi Fungi 544 3.7299999999999996e-150   NTclustered gi|59797378|gb|AY761150.1| 36025 g1185 i0 99.663 97.5151515151515 297 1 100 0 1 297 5 301 Pichia holstii large subunit ribosomal RNA gene, partial sequence blastn 28962 544 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Alaninales Pachysolenaceae Nakazawaea Nakazawaea holstii
1901633 1901633 PRJNA657860_P_NODE_3342_length_161_cov_1.443548_g3286_i0 PRJNA657860 3342 161 1.443548 2.32411228 Alternaria alternata 5599 Fungi Fungi 267 4.39e-67   NTclustered gi|2791117515|gb|PQ217832.1| 5599 g3286 i0 96.855 85.111801242236 159 5 99 0 1 159 5457 5615 Alternaria alternata isolate Karbala-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and external transcribed spacer, partial sequence blastn 13703 267 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
4989698 4989698 PRJNA657860_P_NODE_544_length_475_cov_2.730594_g488_i0 PRJNA657860 544 475 2.730594 12.9703215 root 1 Root_unresolved Root_unresolved 828 0   NTclustered gi|1535924130|ref|NG_063104.1| 4931 g488 i0 98.109 107.225263157895 476 7 100 2 1 475 1053 579 Saccharomyces bayanus CBS 380 18S rRNA gene, partial sequence; from TYPE material blastn 50932 828 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces bayanus
8814369 8814369 PRJNA657860_P_NODE_327_length_629_cov_8.873311_g275_i0 PRJNA657860 327 629 8.873311 55.81312619 Penicillium 5073 Fungi Fungi 1134 0   NTclustered gi|3169896|gb|AF034453.1|AF034453 5075 g275 i0 99.205 99.7615262321145 629 5 100 0 1 629 514 1142 Penicillium camemberti internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 62750 1134 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Penicillium Penicillium camemberti
12640581 12640581 PRJNA657860_P_NODE_1730_length_239_cov_19.133663_g1674_i0 PRJNA657860 1730 239 19.133663 45.72945457 Penicillium 5073 Fungi Fungi 442 1.0899999999999994e-119   NTclustered gi|2255174501|gb|ON787851.1| 5075 g1674 i0 100 100 239 0 100 0 1 239 82 320 Penicillium camemberti strain KKP 3843 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23900 442 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Penicillium Penicillium camemberti
14654373 14654373 PRJNA657860_P_NODE_1012_length_330_cov_3.081911_g956_i0 PRJNA657860 1012 330 3.081911 10.1703063 Exophiala xenobiotica 348802 Fungi Fungi 483 9.3e-132   NTclustered gi|915144019|ref|XR_001230708.1| 348802 g956 i0 96.875 82.730303030303 288 9 87 0 1 288 4454 4741 Exophiala xenobiotica 28S ribosomal RNA (PV05_12071), rRNA blastn 27301 483 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Chaetothyriales Herpotrichiellaceae Exophiala Exophiala xenobiotica
15189935 15189935 PRJNA657860_P_NODE_952_length_340_cov_4.141914_g896_i0 PRJNA657860 952 340 4.141914 14.0825076 root 1 Root_unresolved Root_unresolved 628 1.1699999999999999e-175   NTclustered gi|1028223492|dbj|LC094391.1| 4932 g896 i0 100 107 340 0 100 0 1 340 243 582 Saccharomyces cerevisiae gene for 28S rRNA, partial sequence, strain: SN116 blastn 36380 628 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
19012924 19012924 PRJNA657860_P_NODE_1115_length_315_cov_2.748201_g1059_i0 PRJNA657860 1115 315 2.748201 8.65683315 Nakazawaea 460521 Fungi Fungi 582 8.459999999999998e-162   NTclustered gi|194578726|dbj|AB449811.1| 36025 g1059 i0 100 99.6063492063492 315 0 100 0 1 315 1231 1545 Nakazawaea holstii genes for SSU rRNA, ITS1, 5.8S rRNA, ITS2, LSU rRNA, partial and complete sequence, strain: IFM 56845 blastn 31376 582 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Alaninales Pachysolenaceae Nakazawaea Nakazawaea holstii
21563356 21563356 PRJNA657860_P_NODE_1237_length_297_cov_8.134615_g1181_i0 PRJNA657860 1237 297 8.134615 24.15980655 root 1 Root_unresolved Root_unresolved 549 8.029999999999997e-152   NTclustered gi|1102645715|gb|KY109285.1| 4932 g1181 i0 100 108 297 0 100 0 1 297 341 45 Saccharomyces cerevisiae culture CBS:459 large subunit ribosomal RNA gene, partial sequence blastn 32076 549 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
22838801 22838801 PRJNA657860_P_NODE_1198_length_302_cov_3.558491_g1142_i0 PRJNA657860 1198 302 3.558491 10.74664282 root 1 Root_unresolved Root_unresolved 501 2.32e-137   NTclustered gi|1389182097|gb|CP029160.1| 4932 g1142 i0 99.278 104.394039735099 277 2 92 0 26 302 3881498 3881774 Saccharomyces cerevisiae strain SY14 chromosome I, complete sequence blastn 31527 501 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
22838809 22838809 PRJNA657860_P_NODE_818_length_365_cov_5.945122_g762_i0 PRJNA657860 818 365 5.945122 21.6996953 root 1 Root_unresolved Root_unresolved 675 0   NTclustered gi|1389182097|gb|CP029160.1| 4932 g762 i0 100 116.495890410959 365 0 100 0 1 365 3880704 3880340 Saccharomyces cerevisiae strain SY14 chromosome I, complete sequence blastn 42521 675 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;