RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA657343" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29891985 29891985 PRJNA657343_P_NODE_29231_length_180_cov_6.671756_g29207_i0 PRJNA657343 29231 180 6.671756 12.0091608 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 74.7 3.62e-16   NR CEO95416.1 37360 g29207 i0 84.2 1.28333333333333 38 6 63.3 0 175 62 18 55 CEO95416.1 hypothetical protein PBRA_004142 [Plasmodiophora brassicae] diamond 231 74.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30302982 30302982 PRJNA657343_P_NODE_41472_length_164_cov_0.904348_g41448_i0 PRJNA657343 41472 164 0.904348 1.48313072 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 87.8 1.53e-18   NR SPQ96940.1 37360 g41448 i0 78.4 1.86585365853659 51 11 93.3 0 5 157 158 208 SPQ96940.1 unnamed protein product [Plasmodiophora brassicae] diamond 306 87.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31123661 31123661 PRJNA657343_P_NODE_41995_length_164_cov_0.904348_g41971_i0 PRJNA657343 41995 164 0.904348 1.48313072 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 53.5 1.97e-6   NR CEO97794.1 37360 g41971 i0 51.1 1.57317073170732 45 22 82.3 0 135 1 420 464 CEO97794.1 hypothetical protein PBRA_005908 [Plasmodiophora brassicae] diamond 258 53.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;