contig_metadata
11 rows where bioproject = "PRJNA657343", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19751100 | 19751100 | PRJNA657343_S_NODE_31756_length_155_cov_5.047170_g31731_i0 | PRJNA657343 | 31756 | 155 | 5.04717 | 7.8231135 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 254 | 3.25e-63 | NTclustered | gi|112980873|gb|DQ829677.1| | 171953 | g31731 | i0 | 96.129 | 101.025806451613 | 155 | 6 | 100 | 0 | 1 | 155 | 935 | 781 | Uncultured Acidobacteria bacterium clone DON3 23S ribosomal RNA gene, partial sequence | blastn | 15659 | 254 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 27049850 | 27049850 | PRJNA657343_P_NODE_16902_length_221_cov_0.895349_g16878_i0 | PRJNA657343 | 16902 | 221 | 0.895349 | 1.97872129 | Thermoanaerobaculia bacterium | 2651171 | Bacteria | Bacteria | 42.7 | 0.0286 | NR | HEY0514863.1 | 2651171 | g16878 | i0 | 35.2 | 0.963800904977376 | 71 | 44 | 93.7 | 2 | 218 | 12 | 543 | 613 | HEY0514863.1 TIGR03032 family protein [Thermoanaerobaculia bacterium] | diamond | 213 | 42.7 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Thermoanaerobaculia | Thermoanaerobaculia bacterium | |||||
| 27839278 | 27839278 | PRJNA657343_P_NODE_26164_length_188_cov_1.489209_g26140_i0 | PRJNA657343 | 26164 | 188 | 1.489209 | 2.79971292 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 59.7 | 1.84e-8 | NR | MES1243646.1 | 1978231 | g26140 | i0 | 54.5 | 2.68085106382979 | 55 | 25 | 87.8 | 0 | 171 | 7 | 405 | 459 | MES1243646.1 Glu/Leu/Phe/Val dehydrogenase [Acidobacteriota bacterium] | diamond | 504 | 59.7 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 28439493 | 28439493 | PRJNA657343_P_NODE_8926_length_280_cov_1.523810_g8902_i0 | PRJNA657343 | 8926 | 280 | 1.52381 | 4.266668 | Thermotomaculum hydrothermale | 981385 | Bacteria | Bacteria | 82.4 | 3.89e-16 | NR | WP_201328004.1 | 981385 | g8902 | i0 | 50.7 | 2.95714285714286 | 73 | 36 | 78.2 | 0 | 280 | 62 | 3 | 75 | WP_201328004.1 molecular chaperone DnaJ [Thermotomaculum hydrothermale] | diamond | 828 | 82.4 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Holophagae | Thermotomaculales | Thermotomaculaceae | Thermotomaculum | Thermotomaculum hydrothermale | ||
| 28817911 | 28817911 | PRJNA657343_P_NODE_14168_length_236_cov_1.064171_g14144_i0 | PRJNA657343 | 14168 | 236 | 1.064171 | 2.51144356 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 58.2 | 1.23e-7 | NR | MBA2603637.1 | 1978231 | g14144 | i0 | 44.3 | 2.46610169491525 | 61 | 33 | 77.5 | 1 | 188 | 6 | 364 | 423 | MBA2603637.1 MBL fold metallo-hydrolase [Acidobacteriota bacterium] | diamond | 582 | 58.2 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 28881300 | 28881300 | PRJNA657343_P_NODE_14308_length_235_cov_1.580645_g14284_i0 | PRJNA657343 | 14308 | 235 | 1.580645 | 3.71451575 | Thermoanaerobaculia bacterium | 2651171 | Bacteria | Bacteria | 48.9 | 2.29e-4 | NR | HEV7923420.1 | 2651171 | g14284 | i0 | 47.5 | 0.778723404255319 | 61 | 27 | 76.6 | 3 | 26 | 205 | 167 | 223 | HEV7923420.1 M1 family metallopeptidase [Thermoanaerobaculia bacterium] | diamond | 183 | 48.9 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Thermoanaerobaculia | Thermoanaerobaculia bacterium | |||||
| 30397815 | 30397815 | PRJNA657343_P_NODE_7533_length_298_cov_0.807229_g7509_i0 | PRJNA657343 | 7533 | 298 | 0.807229 | 2.40554242 | Acidobacteriaceae bacterium | 2052142 | Bacteria | Bacteria | 81.6 | 7.18e-16 | NR | MDR3737318.1 | 2052142 | g7509 | i0 | 50 | 0.845637583892617 | 84 | 42 | 84.6 | 0 | 257 | 6 | 227 | 310 | MDR3737318.1 hypothetical protein [Acidobacteriaceae bacterium] | diamond | 252 | 81.6 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobales | Acidobacteriaceae | Acidobacteriaceae bacterium | |||
| 30492146 | 30492146 | PRJNA657343_P_NODE_29053_length_181_cov_1.545455_g29029_i0 | PRJNA657343 | 29053 | 181 | 1.545455 | 2.79727355 | Acidobacteriaceae bacterium | 2052142 | Bacteria | Bacteria | 90.1 | 3.23e-19 | NR | MDR3736461.1 | 2052142 | g29029 | i0 | 69.5 | 1.95580110497238 | 59 | 18 | 97.8 | 0 | 1 | 177 | 91 | 149 | MDR3736461.1 chaperonin GroEL [Acidobacteriaceae bacterium] | diamond | 354 | 90.1 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobales | Acidobacteriaceae | Acidobacteriaceae bacterium | |||
| 31230846 | 31230846 | PRJNA657343_P_NODE_37915_length_167_cov_0.881356_g37891_i0 | PRJNA657343 | 37915 | 167 | 0.881356 | 1.47186452 | Acidobacteriota | 57723 | Bacteria | Bacteria | 52 | 1.06e-6 | NR | HLI84642.1 | 2212468 | g37891 | i0 | 59.1 | 3.25149700598802 | 44 | 17 | 77.2 | 1 | 157 | 29 | 43 | 86 | HLI84642.1 RNA-binding protein [Bryobacteraceae bacterium] | diamond | 543 | 52.4 | 0.99236641221374 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Bryobacterales | Bryobacteraceae | Bryobacteraceae bacterium | |||
| 31673721 | 31673721 | PRJNA657343_P_NODE_38897_length_166_cov_0.888889_g38873_i0 | PRJNA657343 | 38897 | 166 | 0.888889 | 1.47555574 | Bacteria | 2 | Bacteria | Bacteria | 48.1 | 1.67e-4 | NR | MCC6131522.1 | 1978231 | g38873 | i0 | 44.2 | 5.92771084337349 | 52 | 29 | 94 | 0 | 159 | 4 | 242 | 293 | MCC6131522.1 protein kinase [Acidobacteriota bacterium] | diamond | 984 | 48.1 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 32326383 | 32326383 | PRJNA657343_P_NODE_41799_length_164_cov_0.904348_g41775_i0 | PRJNA657343 | 41799 | 164 | 0.904348 | 1.48313072 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 42.4 | 0.0178 | NR | PYR51180.1 | 1978231 | g41775 | i0 | 42.2 | 0.823170731707317 | 45 | 25 | 82.3 | 1 | 149 | 15 | 708 | 751 | PYR51180.1 MAG: hypothetical protein DMF89_06935 [Acidobacteriota bacterium] | diamond | 135 | 42.4 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;