RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA657343", tax_kingdom = "Methanobacteriati" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27902409 27902409 PRJNA657343_P_NODE_21365_length_202_cov_2.895425_g21341_i0 PRJNA657343 21365 202 2.895425 5.8487585 Thermococcus zilligii 54076 Archaea Archaea 42 0.0398   NR WP_010479164.1 54076 g21341 i0 41.8 0.816831683168317 55 31 81.7 1 23 187 43 96 WP_010479164.1 hypothetical protein [Thermococcus zilligii] diamond 165 42 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus zilligii
29777575 29777575 PRJNA657343_P_NODE_33311_length_172_cov_1.536585_g33287_i0 PRJNA657343 33311 172 1.536585 2.6429262 root 1 Root_unresolved Root_unresolved 51.6 8e-6   NR HET8688652.1 2213 g33287 i0 100 10.8313953488372 23 0 40.1 0 126 58 136 158 HET8688652.1 GTP cyclohydrolase I [Methanosarcina sp.] diamond 1863 51.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;