RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA657343", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 10 ✖

tax_kingdom 1

  • Metazoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15927030 15927030 PRJNA657343_S_NODE_29333_length_164_cov_3.721739_g29308_i0 PRJNA657343 29333 164 3.721739 6.10365196 Syndesmis kurakaikina 2711315 Platyhelminthes Platyhelminthes 121 3.7e-23   NTclustered gi|1858375042|gb|MT622644.1| 2711315 g29308 i0 83.721 52.1585365853659 129 19 78 2 14 141 6066 6193 Syndesmis kurakaikina small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8554 121 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Umagillidae Syndesmis Syndesmis kurakaikina
17200964 17200964 PRJNA657343_P_NODE_26014_length_188_cov_2.841727_g25990_i0 PRJNA657343 26014 188 2.841727 5.34244676 Echinococcus granulosus 6210 Platyhelminthes Platyhelminthes 172 1.19e-38   NTclustered gi|1373856714|ref|XM_024494734.1| 6210 g25990 i0 84.153 25.5159574468085 183 23 96 6 6 185 477 656 Echinococcus granulosus 60S ribosomal protein L8 (EGR_05485), partial mRNA blastn 4797 172 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
21025343 21025343 PRJNA657343_P_NODE_16177_length_224_cov_3.154286_g16153_i0 PRJNA657343 16177 224 3.154286 7.06560064 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 172 1.46e-38   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g16153 i0 85.802 0.723214285714286 162 23 72 0 4 165 162 1 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 162 172 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
23575509 23575509 PRJNA657343_P_NODE_16539_length_222_cov_3.583815_g16515_i0 PRJNA657343 16539 222 3.583815 7.9560693 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 116 3.94e-29   NR PAA51031.1 282301 g16515 i0 73.6 4.86486486486486 72 19 97.3 0 217 2 291 362 PAA51031.1 hypothetical protein BOX15_Mlig008771g2 [Macrostomum lignano] diamond 1080 116 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
26796564 26796564 PRJNA657343_P_NODE_27081_length_186_cov_1.277372_g27057_i0 PRJNA657343 27081 186 1.277372 2.37591192 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 47.4 4.14e-4   NR PAA93605.1 282301 g27057 i0 51.2 1.38709677419355 43 21 69.4 0 49 177 384 426 PAA93605.1 hypothetical protein BOX15_Mlig031413g1 [Macrostomum lignano] diamond 258 47.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
27302734 27302734 PRJNA657343_P_NODE_14803_length_232_cov_1.704918_g14779_i0 PRJNA657343 14803 232 1.704918 3.95540976 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 100 2.5499999999999998e-23   NR PAA70965.1 282301 g14779 i0 59.5 0.956896551724138 74 30 95.7 0 6 227 242 315 PAA70965.1 hypothetical protein BOX15_Mlig022180g1 [Macrostomum lignano] diamond 222 100 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
27757219 27757219 PRJNA657343_P_NODE_37344_length_167_cov_1.694915_g37320_i0 PRJNA657343 37344 167 1.694915 2.83050805 Metazoa 33208 Platyhelminthes Platyhelminthes 57 1.23e-7   NR PAA74278.1 282301 g37320 i0 67.5 2.15568862275449 40 13 71.9 0 8 127 810 849 PAA74278.1 hypothetical protein BOX15_Mlig019417g1 [Macrostomum lignano] diamond 360 57 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
31325866 31325866 PRJNA657343_P_NODE_16495_length_222_cov_7.075145_g16471_i0 PRJNA657343 16495 222 7.075145 15.7068219 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 74.3 7.5e-14   NR VDN11127.1 60516 g16471 i0 57.4 7.14864864864865 61 24 79.7 1 7 183 202 262 VDN11127.1 unnamed protein product [Dibothriocephalus latus] diamond 1587 74.7 0.994645247657296 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Dibothriocephalus Dibothriocephalus latus
31642062 31642062 PRJNA657343_P_NODE_13636_length_239_cov_2.068421_g13612_i0 PRJNA657343 13636 239 2.068421 4.94352619 Metazoa 33208 Platyhelminthes Platyhelminthes 92.4 3.74e-20   NR AKU37272.1 38744 g13612 i0 55.1 7.85774058577406 78 34 96.7 1 7 237 202 279 AKU37272.1 cathepsin B [Schistosoma mekongi] diamond 1878 92.8 0.995689655172414 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mekongi
32452837 32452837 PRJNA657343_P_NODE_30439_length_178_cov_1.534884_g30415_i0 PRJNA657343 30439 178 1.534884 2.73209352 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 67.4 1.74e-12   NR AAY97887.1 6182 g30415 i0 63.2 0.960674157303371 57 21 96.1 0 4 174 7 63 AAY97887.1 unknown [Schistosoma japonicum] diamond 171 67.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;