RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA657343", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA657343 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2435593 2435593 PRJNA657343_P_NODE_30062_length_179_cov_1.200000_g30038_i0 PRJNA657343 30062 179 1.2 2.148 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 322 1.05e-83   NTclustered gi|2163362299|dbj|LC663795.1| 563755 g30038 i0 100 97.0782122905028 174 0 97 0 3 176 1416 1589 Sandona mutans Flagella An1019C gene for 18S rRNA, partial sequence blastn 17377 322 1 Eukaryota Sar   Cercozoa   Glissomonadida Sandonidae Sandona Sandona mutans
14653089 14653089 PRJNA657343_S_NODE_30232_length_161_cov_37.160714_g30207_i0 PRJNA657343 30232 161 37.160714 59.82874954 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 180 5.88e-41   NTclustered gi|48727777|gb|AY620267.1| 175275 g30207 i0 86.957 99.888198757764 161 19 99 2 1 159 981 1141 Uncultured cercozoan clone 4-1.8 small subunit ribosomal RNA gene, partial sequence blastn 16082 180 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;