RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA657343", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA657343 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26650246 26650246 PRJNA657343_P_NODE_33901_length_171_cov_1.270492_g33877_i0 PRJNA657343 33901 171 1.270492 2.17254132 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 69.3 5.36e-13   NR XP_068363703.1 1144522 g33877 i0 56.6 8.2280701754386 53 23 93 0 163 5 6 58 XP_068363703.1 ribosomal protein L21e [Tritrichomonas foetus] diamond 1407 69.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30429302 30429302 PRJNA657343_P_NODE_33153_length_172_cov_2.073171_g33129_i0 PRJNA657343 33153 172 2.073171 3.56585412 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 44.7 0.00293   NR XP_001329642.1 412133 g33129 i0 44.2 5.21511627906977 43 24 75 0 30 158 494 536 XP_001329642.1 regulation of choline O-acetyltransferase protein [Trichomonas vaginalis G3] diamond 897 44.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30535883 30535883 PRJNA657343_P_NODE_5733_length_328_cov_14.784946_g5709_i0 PRJNA657343 5733 328 14.784946 48.49462288 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 77 1.2e-15   NR XP_001295174.1 412133 g5709 i0 43.2 4.20731707317073 81 43 73.2 2 320 81 14 92 XP_001295174.1 uncharacterized protein TVAGG3_0287910 [Trichomonas vaginalis G3] diamond 1380 77 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31029451 31029451 PRJNA657343_P_NODE_21995_length_200_cov_1.774834_g21971_i0 PRJNA657343 21995 200 1.774834 3.549668 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 49.7 4.72e-5   NR XP_067775855.1 135588 g21971 i0 43.9 2.58 57 31 85.5 1 23 193 7 62 XP_067775855.1 Ras family protein [Histomonas meleagridis] diamond 516 49.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;