RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA657343", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA657343 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24849457 24849457 PRJNA657343_P_NODE_38680_length_166_cov_1.683761_g38656_i0 PRJNA657343 38680 166 1.683761 2.79504326 Fidelibacterota bacterium 2026760 Bacteria Bacteria 103 4.24e-24   NR MDB3980052.1 2026760 g38656 i0 87 6.83132530120482 54 7 97.6 0 1 162 86 139 MDB3980052.1 adenosylhomocysteinase [Fidelibacterota bacterium] diamond 1134 103 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30839647 30839647 PRJNA657343_P_NODE_13674_length_239_cov_1.400000_g13650_i0 PRJNA657343 13674 239 1.4 3.346 Fidelibacterota bacterium 2026760 Bacteria Bacteria 43.5 0.0188   NR MBI65304.1 2026760 g13650 i0 58.6 0.364016736401674 29 12 36.4 0 95 9 305 333 MBI65304.1 hypothetical protein [Fidelibacterota bacterium] diamond 87 43.5 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32579255 32579255 PRJNA657343_P_NODE_40199_length_165_cov_0.896552_g40175_i0 PRJNA657343 40199 165 0.896552 1.4793108 Fidelibacterota bacterium 2026760 Bacteria Bacteria 43.1 0.00928   NR HIB58228.1 2026760 g40175 i0 51.3 1.94545454545455 39 19 70.9 0 123 7 81 119 HIB58228.1 hypothetical protein [Fidelibacterota bacterium] diamond 321 43.1 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;