RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA656952" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA656952 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27302727 27302727 PRJNA656952_P_NODE_42983_length_242_cov_0.911243_g42796_i0 PRJNA656952 42983 242 0.911243 2.20520806 archaeon 1906665 Archaea Archaea 85.1 3.69e-17   NR MDP2439816.1 1906665 g42796 i0 52.6 0.966942148760331 78 36 96.7 1 9 242 190 266 MDP2439816.1 hypothetical protein [archaeon] diamond 234 85.1 1 Archaea               archaeon
27713548 27713548 PRJNA656952_P_NODE_34464_length_249_cov_0.875000_g34277_i0 PRJNA656952 34464 249 0.875 2.17875 Halococcus dombrowskii 179637 Archaea Archaea 142 2.75e-41   NR WP_244704864.1 179637 g34277 i0 83.5 0.951807228915663 79 12 95.2 1 3 239 93 170 WP_244704864.1 hypothetical protein [Halococcus dombrowskii] diamond 237 142 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
29134164 29134164 PRJNA656952_P_NODE_25449_length_276_cov_1.497537_g25262_i0 PRJNA656952 25449 276 1.497537 4.13320212 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 43.9 0.0145   NR MCW4033268.1 2026714 g25262 i0 48.5 0.358695652173913 33 17 35.9 0 178 276 54 86 MCW4033268.1 tRNA (cytidine(56)-2'-O)-methyltransferase [Candidatus Bathyarchaeota archaeon] diamond 99 43.9 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon
31819645 31819645 PRJNA656952_P_NODE_41197_length_243_cov_0.905882_g41010_i0 PRJNA656952 41197 243 0.905882 2.20129326 archaeon 1906665 Archaea Archaea 72.8 8.82e-13   NR RYY35617.1 1906665 g41010 i0 46.5 0.876543209876543 71 38 87.7 0 219 7 264 334 RYY35617.1 MAG: hypothetical protein EON62_02370 [archaeon] diamond 213 72.8 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;