RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA656952", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA656952 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1898481 1898481 PRJNA656952_P_NODE_2_length_6188_cov_5.521341_g1_i0 PRJNA656952 2 6188 5.521341 341.66058108 Potexvirus cymbidii 3433819 Viruses Viruses 11289 0   NTclustered gi|1964785387|gb|MT833930.1| 12178 g1 i0 99.596 35.9789915966387 6188 25 100 0 1 6188 6203 16 Cymbidium mosaic virus isolate Chenshan, complete genome blastn 222638 11289 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus cymbidii
4450180 4450180 PRJNA656952_P_NODE_28684_length_261_cov_1.638298_g28497_i0 PRJNA656952 28684 261 1.638298 4.27595778 Potexvirus cymbidii 3433819 Viruses Viruses 460 3.3399999999999995e-125   NTclustered gi|133902391|gb|EF125178.1| 12178 g28497 i0 98.837 27.9770114942529 258 3 99 0 4 261 2703 2446 Cymbidium mosaic virus clone 18-1, complete genome blastn 7302 460 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus cymbidii
22299993 22299993 PRJNA656952_P_NODE_9738_length_396_cov_1.191950_g9551_i0 PRJNA656952 9738 396 1.19195 4.720122 Potexvirus cymbidii 3433819 Viruses Viruses 721 0   NTclustered gi|582039489|gb|KF853253.1| 12178 g9551 i0 99.495 99.9318181818182 396 2 100 0 1 396 614 219 Cymbidium mosaic virus isolate GZ2 coat protein gene, complete cds blastn 39573 721 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus cymbidii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;