RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA656952" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA656952 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8275544 8275544 PRJNA656952_P_NODE_27907_length_265_cov_1.239583_g27720_i0 PRJNA656952 27907 265 1.239583 3.28489495 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 363 9.849999999999999e-96   NTclustered gi|821341785|gb|CP011389.1| 1309411 g27720 i0 91.892 5.89433962264151 259 21 98 0 7 265 1301542 1301284 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 1562 363 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
13376492 13376492 PRJNA656952_P_NODE_33811_length_249_cov_0.875000_g33624_i0 PRJNA656952 33811 249 0.875 2.17875 Deinococcus taeanensis 2737050 Bacteria Bacteria 206 1.6299999999999998e-48   NTclustered gi|2105695795|gb|CP083459.1| 2737050 g33624 i0 83.117 9.13654618473896 231 33 92 6 1 228 373214 373441 Deinococcus taeanensis strain TS293 plasmid p_TS293_5, complete sequence blastn 2275 206 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taeanensis
18474844 18474844 PRJNA656952_P_NODE_41215_length_243_cov_0.905882_g41028_i0 PRJNA656952 41215 243 0.905882 2.20129326 Deinococcus aetherius 200252 Bacteria Bacteria 291 4.26e-74   NTclustered gi|2281898870|dbj|AP026562.1| 200252 g41028 i0 90 189.259259259259 230 16 93 6 1 226 299223 299449 Deinococcus aetherius ST0316 plasmid pDAETH-2 DNA, complete genome blastn 45990 291 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
27283286 27283286 PRJNA656952_P_NODE_8963_length_408_cov_1.379104_g8776_i0 PRJNA656952 8963 408 1.379104 5.62674432 root 1 Root_unresolved Root_unresolved 259 3.17e-79   NR 1TAQ_A 271 g8776 i0 100 3.97058823529412 135 0 99.3 0 406 2 439 573 1TAQ_A Chain A, TAQ DNA POLYMERASE [Thermus aquaticus] diamond 1620 259 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
27820257 27820257 PRJNA656952_P_NODE_29544_length_257_cov_1.673913_g29357_i0 PRJNA656952 29544 257 1.673913 4.30195641 root 1 Root_unresolved Root_unresolved 172 8.149999999999998e-48   NR 1TAQ_A 271 g29357 i0 100 5.95330739299611 85 0 99.2 0 256 2 356 440 1TAQ_A Chain A, TAQ DNA POLYMERASE [Thermus aquaticus] diamond 1530 172 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
31092383 31092383 PRJNA656952_P_NODE_31635_length_251_cov_0.865169_g31448_i0 PRJNA656952 31635 251 0.865169 2.17157419 Deinococcus antarcticus 1298767 Bacteria Bacteria 157 1.2399999999999997e-42   NR WP_380079762.1 1298767 g31448 i0 95.1 0.9800796812749 82 4 98 0 2 247 379 460 WP_380079762.1 vWA domain-containing protein [Deinococcus antarcticus] diamond 246 157 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
31819641 31819641 PRJNA656952_P_NODE_23277_length_286_cov_1.366197_g23090_i0 PRJNA656952 23277 286 1.366197 3.90732342 Deinococcus psychrotolerans 2489213 Bacteria Bacteria 61.2 1.46e-8   NR AZI41860.1 2489213 g23090 i0 50 0.776223776223776 74 34 76.6 2 236 18 13 84 AZI41860.1 site-specific integrase [Deinococcus psychrotolerans] diamond 222 61.2 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus psychrotolerans
31819643 31819643 PRJNA656952_P_NODE_31397_length_251_cov_0.865169_g31210_i0 PRJNA656952 31397 251 0.865169 2.17157419 Deinococcus reticulitermitis 856736 Bacteria Bacteria 157 2.37e-45   NR WP_177183221.1 856736 g31210 i0 95.2 0.99203187250996006 83 4 99.2 0 250 2 86 168 WP_177183221.1 carbohydrate kinase family protein [Deinococcus reticulitermitis] diamond 249 157 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus reticulitermitis
31819644 31819644 PRJNA656952_P_NODE_37457_length_246_cov_0.890173_g37270_i0 PRJNA656952 37457 246 0.890173 2.18982558 Deinococcus antarcticus 1298767 Bacteria Bacteria 165 3.66e-48   NR WP_380080612.1 1298767 g37270 i0 98.8 0.975609756097561 80 1 97.6 0 240 1 1 80 WP_380080612.1 cell division protein ZapE [Deinococcus antarcticus] diamond 240 165 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;