RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA656952", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA656952 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22837316 22837316 PRJNA656952_P_NODE_15438_length_336_cov_0.847909_g15251_i0 PRJNA656952 15438 336 0.847909 2.84897424 Pseudobdellovibrio 2862745 Bacteria Bacteria 289 2.22e-73   NTclustered gi|507148233|ref|NR_103040.1| 453816 g15251 i0 82.353 210.25 340 52 100 8 1 336 173 508 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 70644 289 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
28218074 28218074 PRJNA656952_P_NODE_39726_length_244_cov_0.900585_g39539_i0 PRJNA656952 39726 244 0.900585 2.1974274 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 163 2.44e-46   NR HLT22638.1 2081706 g39539 i0 98.8 0.995901639344262 81 1 99.6 0 244 2 224 304 HLT22638.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteriovoracaceae bacterium] diamond 243 163 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31882912 31882912 PRJNA656952_P_NODE_26277_length_272_cov_1.547739_g26090_i0 PRJNA656952 26277 272 1.547739 4.20985008 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 60.5 3.06e-8   NR WP_413287899.1 3394358 g26090 i0 34.7 2.04044117647059 98 54 97.1 1 8 271 379 476 WP_413287899.1 spermidine synthase [Bdellovibrio sp. HCB337] diamond 555 60.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;